Pairwise Alignments

Query, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

Subject, 697 a.a., excinuclease ABC subunit B from Burkholderia phytofirmans PsJN

 Score =  865 bits (2235), Expect = 0.0
 Identities = 443/671 (66%), Positives = 530/671 (78%), Gaps = 8/671 (1%)

Query: 4   PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63
           PF+L   + P+GDQP AI  L EG+EDGL+ QTLLGVTGSGKTFT+AN IA L RP +V 
Sbjct: 25  PFQLYQPYPPAGDQPTAIDTLVEGVEDGLSFQTLLGVTGSGKTFTMANTIARLGRPAIVF 84

Query: 64  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123
           APNKTLAAQLY E +EFFP NAVEYFVSYYDYYQPEAYVP  D FIEKD+S+NEHIEQMR
Sbjct: 85  APNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMR 144

Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183
           LSATK+++ERRDVV+VA+VSAIYG+G+P  Y KM+L L  G  + QR I+ RL  +QY R
Sbjct: 145 LSATKSLMERRDVVIVATVSAIYGIGNPSEYHKMILTLRTGDKLGQRDIIARLIAMQYNR 204

Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243
           N+  FQRG+FRVRG+ IDIFPAE  ++A+RVELFD+E+E L LFDPLTG++   IPRFT+
Sbjct: 205 NEADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEIETLQLFDPLTGRVRQKIPRFTV 264

Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303
           YP +HYVTPR+ +V+A+E IK EL  R +      KL+E QRL QRT+FDLEM+ ELG+C
Sbjct: 265 YPSSHYVTPRDTVVRAVETIKAELRERLEFFYSGGKLVEAQRLEQRTRFDLEMLQELGFC 324

Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363
            GIENYSR  SG  PGEPPPTL DYLP+D L+++DESHV I Q+ GMY GDRARKE LV+
Sbjct: 325 KGIENYSRHFSGAAPGEPPPTLVDYLPSDALMLLDESHVLIGQLNGMYNGDRARKENLVD 384

Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423
           YGFRLPSALDNRPLKF EFE    Q ++VSATP +YE +K+ G V +Q+VRPTGL+DP I
Sbjct: 385 YGFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-QKTAGQVAEQLVRPTGLVDPEI 443

Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483
           EVRP  +QVDD+L EI +R    +RVLVT LTKRMAE LTE+L +HG +VRYLHSDIDTV
Sbjct: 444 EVRPARSQVDDVLGEINERVKAGDRVLVTVLTKRMAEQLTEFLADHGVKVRYLHSDIDTV 503

Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543
           ER+EIIRDLRLG FDVLVGINLLREGLD+PEVSLVAILDADKEGFLR+ERSLIQTIGRAA
Sbjct: 504 ERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAA 563

Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603
           RNVNGKAILYGDKIT SM +AI ETERRR KQ  +N  +GITP+G+ K++ DI+    N+
Sbjct: 564 RNVNGKAILYGDKITDSMRRAIDETERRRNKQIAFNLANGITPRGVVKRIRDIIDGVYNV 623

Query: 604 AKTKAK-GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662
              +A+    ++R   E      DMS K L +++  LE  MM+HA+NLEFE+AAQ RDQL
Sbjct: 624 DDARAELKEQQARAKFE------DMSEKQLAKELKRLEKQMMEHAKNLEFEKAAQTRDQL 677

Query: 663 HQLRELFIAAS 673
             LR+    A+
Sbjct: 678 ALLRQRVFGAN 688