Pairwise Alignments
Query, 1048 a.a., exonuclease, dsDNA, ATP-dependent from Escherichia coli BL21
Subject, 1082 a.a., exonuclease subunit SbcC from Rahnella sp. WP5
Score = 855 bits (2208), Expect = 0.0
Identities = 525/1102 (47%), Positives = 679/1102 (61%), Gaps = 75/1102 (6%)
Query: 1 MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60
MKILSLRLKNLNSL+GEWKIDFT EPFASNGLFAITGPTGAGKTTLLDAICLALYH+TPR
Sbjct: 1 MKILSLRLKNLNSLEGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR 60
Query: 61 LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCA 120
L N++ SQN+LMTR TAE LAEVEFEVKG YRAFWSQ RA+N PDGNLQ P+VELA A
Sbjct: 61 L-NITPSQNELMTRHTAESLAEVEFEVKGVGYRAFWSQRRAKNSPDGNLQAPKVELALLA 119
Query: 121 DGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE 180
DGKILADKV+DKL+ ATLTGLD+GRFT+SM+LSQGQFAAFLNA +RAELLEELTGTE
Sbjct: 120 DGKILADKVRDKLDAIATLTGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTE 179
Query: 181 IYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQ 240
IYG +S VFEQHK AR L+ L + +G+ LL+ EQ Q+L A L +E L Q
Sbjct: 180 IYGLLSQRVFEQHKEARIALDGLHQRMAGIELLSEEQRQTLEAQRAELNTQEITLSQQAQ 239
Query: 241 QEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRP---HWE 297
Q QQ LNWL + ++QQ+ + QQ L A E A PQL L+ ++PA LRP +
Sbjct: 240 QRQQDLNWLQQWQQVQQKQQQSQQQLTAAEQENLTAAPQLQQLARSEPAEKLRPLLNDRQ 299
Query: 298 RIAEHSAALAH-----TRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSL--NT 350
R + + L T+QQ +++ ++A+ + H A ++ AE Q+Q Q+L
Sbjct: 300 RCRDDAQRLQQLLIQLTQQQEQQIAQMTPLSLAVEQA--HTARQKQAEEQRQMQTLIEEK 357
Query: 351 WLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNA--------LAAI 402
L QW L + S+ QQ+T QKL+ AA+
Sbjct: 358 ILPLDSEIAQWRKSLVETQQAVSESQKQAGEHSATLQQITAERQKLDEESRQHHTRQAAL 417
Query: 403 TLTLTADEVATALAQHA--------------EQRPLRQHLVALHGQIVPQQKRLAQLQ-- 446
T L + A + + RP+RQ L +L QI PQ + Q Q
Sbjct: 418 TEALNVAQQRQAELEKQYPQVVLQKRQTELMQLRPVRQQLFSL-AQIFPQLNQRVQQQHK 476
Query: 447 --VAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQ 504
Q + E+ R L +R + +++ + L DVK + +QE I +LEA+RA LQ+G+
Sbjct: 477 DFAQYQMLLAEEELR---LGAIRLQCQKQLEHLNDVKALHKQEMLIVSLEAERANLQSGK 533
Query: 505 PCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDE 564
CPLCGSTSHPA+E YQ ++P R+ ++ E G L ++ + +Q R +
Sbjct: 534 ACPLCGSTSHPAIEHYQQVKPSETAQRVEKMQLEFDAAKASGIELAAKIKGLKEQQTRLQ 593
Query: 565 NEAQSLRQDEQALTQQWQAVTASLNIT--LQPLDDIQPWLDAQDEHERQLRLLSQRHELQ 622
+ + +Q A T WQ ++A LN+T L DI WL A+DE E+Q + +HE
Sbjct: 594 TQLEQDQQQLNAHTLNWQQLSAPLNLTFTLHDTADITQWLTARDEEEQQSQARLSQHE-- 651
Query: 623 GQIAAHNQQI-------IQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQ 675
Q+A QQ + QQ+++Q+ LL +T L Q ++ + ++Q A+
Sbjct: 652 -QLARALQQAKDALNDALNAQQKVQQQSALLTERVT--RLEEMQAKSQQDLVRLQKQLAE 708
Query: 676 SWQQRQNELTALQNRI---QQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQ 732
++ +EL A + + +Q+ + E L Q + + V + EQ L Q
Sbjct: 709 G-EKSLSELNARRLELFGERQVAQVREHLHQQQQATEQALSDVQTALHKAQEQRDQLAGQ 767
Query: 733 QQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQ 792
+ QQQ + A L + + + AL AS F D+ A AL+D+ QL+Q K++L+ Q
Sbjct: 768 LASTQQQQLQTAAQLTQVEQAWQQALSASGFADEAAVKLALLDDALRQQLQQRKEHLQQQ 827
Query: 793 RRQAQTLVTQTAETLAQHQQHRP-------DDGLALTVTVEQIQQELAQTHQKLRENTTS 845
QAQ L+ + L +HQ RP D ALTV ++ Q+L Q+L
Sbjct: 828 LAQAQALLADARQQLEKHQLARPAHLSETDSDLNALTVQQAELAQQLKVLQQRL------ 881
Query: 846 QGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLD 905
GE++ QL+ D QQTL+ QIAQ + +DWGYLN +IGS +G KFRKFAQGLTLD
Sbjct: 882 -GEVKNQLESDKQRHHGQQTLIAQIAQAQRTCDDWGYLNQMIGSSDGAKFRKFAQGLTLD 940
Query: 906 NLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALAL 965
+LV+LAN+QL +LHGRYLLQRK S+ALE++VVDTWQADAVRDTRTLSGGESFLVSLALAL
Sbjct: 941 HLVYLANRQLEKLHGRYLLQRKTSDALELQVVDTWQADAVRDTRTLSGGESFLVSLALAL 1000
Query: 966 ALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1025
ALSDLVS KTRIDSLFLDEGFGTLD++TLDTALDALD+LNASGKTIGVISHVEAMK+RIP
Sbjct: 1001 ALSDLVSDKTRIDSLFLDEGFGTLDADTLDTALDALDSLNASGKTIGVISHVEAMKDRIP 1060
Query: 1026 VQIKVKKINGLGYSKLESTFAV 1047
VQIKV K+NGLG S+L S F V
Sbjct: 1061 VQIKVTKVNGLGISRLSSEFKV 1082