Pairwise Alignments

Query, 1048 a.a., exonuclease, dsDNA, ATP-dependent from Escherichia coli BL21

Subject, 1212 a.a., AAA family ATPase from Pseudomonas fluorescens SBW25-INTG

 Score =  452 bits (1164), Expect = e-131
 Identities = 396/1228 (32%), Positives = 572/1228 (46%), Gaps = 204/1228 (16%)

Query: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60
            MKIL++RLKNL SL G ++IDFT EP AS GLFAITGPTGAGK+TLLDA+CLAL+   PR
Sbjct: 1    MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR 60

Query: 61   LSNVSQSQ-------------NDLMTRDTAECLAEVEFE-VKGEAYRAFWSQNRARNQPD 106
            L +  Q++               L+ R T    AEV+F  V G  YRA W  NRAR++  
Sbjct: 61   LGDTGQAKMPDADSDISIGDPRTLLRRGTGGGYAEVDFVGVSGRRYRARWEANRARDKAS 120

Query: 107  GNLQVPRVELARCADGKILA-DKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAK 165
            G LQ  R  L      ++LA  K + K +L  +L GL++ +FTR++LL+Q +F+AFL A 
Sbjct: 121  GKLQNSRQSLIDLDSDQLLASQKTEYKTQLELSL-GLNFEQFTRAVLLAQSEFSAFLKAN 179

Query: 166  PKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASL 225
              ER+ELLE+LT T +Y Q+    F++ K AR   ++LQ QA+GV  L  E      A L
Sbjct: 180  DNERSELLEKLTDTALYTQLGRRAFDKAKDARDAHKQLQDQATGVVPLAAE----ARAEL 235

Query: 226  QVLTDEEKQLLTAQQQEQQSL----NWLTRLDELQQEASRRQQALQQALAEEEKAQPQLA 281
                D  +Q L AQQ + + L     WL  L E Q+      + LQ+A AE +   PQ  
Sbjct: 236  DQQFDAAQQQLKAQQAQLKQLELQHTWLKELREWQERQLAATEQLQRAQAEWDTQAPQRQ 295

Query: 282  ALSLAQPARNLRPHWERIAEHSAALAHTRQQIE-------EVNTRLQSTM--------AL 326
             LS  +     R  + R AE +  LA   +QI+       E++TR +           AL
Sbjct: 296  DLSRLEQLAPQRHQFARQAELNTVLAPLAEQIQSHSQQQAELHTRQEQAQQQQASAQTAL 355

Query: 327  RASIRHHA-----------------------AKQSAELQQQ-------QQSLNTWLQEH- 355
             A+++H                         AK++ + QQ        Q  LN  L++  
Sbjct: 356  AAALKHQGDAAPLLRQAFEEQSTLAHLTKALAKRTEDKQQHETACAEGQSQLNGLLEKQR 415

Query: 356  ---DRFRQWNNEL-------------AGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNAL 399
               +R ++   EL             + +R +  Q       L + Q +L   EQ+  A 
Sbjct: 416  QVAERLQRLATELDRSAALAPLSDAWSAYRDRLQQLMLIGNRLNKGQAELPQLEQR--AT 473

Query: 400  AAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIV----------------------P 437
            AA+       E    L Q A   P   H VA   Q++                       
Sbjct: 474  AAVEQFTQQREALDLLYQEAGAEP---HAVAEQIQLLASLLQDNRKQQRAFEDLTRLWDS 530

Query: 438  QQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEK----TQQLADVKTICEQE--ARIK 491
            QQ+   Q     Q +T  Q QR   LN+     K +     Q L   K + E++  AR  
Sbjct: 531  QQQLDQQASALTQKLTDAQQQRE-QLNQTGLHTKAELAIAEQTLTVTKQLLERQRLARSA 589

Query: 492  TLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEP--GVNQSRLLALENEVKKLGEEGATL 549
            ++E  RAQLQ  QPCP+CGS  HP  +    L+     +++     +  V  L E+   L
Sbjct: 590  SVEELRAQLQDDQPCPVCGSHEHPYHQPEALLQSLGRHDENEEATAQKAVDTLKEKLTEL 649

Query: 550  RGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQ---- 605
            RG++  +  Q +    + + L   +QAL    +A   +  +  Q       WLD Q    
Sbjct: 650  RGEVGGLIAQQKEYLQQQEQLATHQQALKPSLEAHPLAATLFNQDAAKRSAWLDQQLSQL 709

Query: 606  -----DEHERQLRLLSQRH---ELQGQIAAHNQQIIQYQQQIEQRQQLLLT--------- 648
                  + +RQ  LL+ +     LQ Q+ A  +   Q +Q +  +Q+ L +         
Sbjct: 710  TQSITQDEQRQAALLNLQQNAGRLQQQVQAAQEASQQARQLLVDQQRELASDRERLEQEL 769

Query: 649  ----------TLTGY----ALTLPQEDEEES----WLATRQQEAQSWQQRQ----NELTA 686
                      TL G     A T  Q D++ S     L  ++ E    Q+RQ     E T 
Sbjct: 770  NAFTSLLPADTLEGLRAEPAATFMQLDQQVSQRLEQLGHQRDELAEQQERQQAIEKEQTH 829

Query: 687  LQNRIQQLTPILETLPQ-SDELPHCEETV--------VLENWRQVHEQCLALHSQQQTLQ 737
             Q+R QQL  +++ + + + +    ++T+          E W+Q  +Q + L  Q +T  
Sbjct: 830  QQHRQQQLEALVQQVTELATQQQAAQQTLSALLGEHSSAEQWQQHVDQAVTLSRQNETDA 889

Query: 738  QQDVLA------------------AQSLQKAQAQFDTALQA-----SVFDDQQAFLAALM 774
             Q + A                   Q+LQ  Q   DT +          DD+        
Sbjct: 890  NQQLQAIHNARLQLTADLKALHERQQALQAEQHSLDTRISEWRALHPELDDEGLNRLLAY 949

Query: 775  DEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQ 834
            D+  ++QL Q  Q+ E    QA+ L+ +  + LA+HQ     +     +  E +   LA 
Sbjct: 950  DDAQVSQLRQQLQHSEKAVEQAKVLLQEREQRLAEHQALHNGN-----LDTEALDSALAS 1004

Query: 835  THQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDK 894
             +Q+L E      E+R +  +D   +   Q   +QIA+   + + W  LN+LIGS  GD 
Sbjct: 1005 LNQQLAEGEKQCAELRARQSEDQRRQDANQAFAEQIAKAYDEWQRWARLNALIGSATGDT 1064

Query: 895  FRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGG 954
            FRK AQ   LD LVH AN QL +L  RY L+R  S  L + V+DT   D +R   +LSGG
Sbjct: 1065 FRKIAQAYNLDLLVHHANVQLRQLVRRYRLKRGGS-MLGLLVMDTEMGDELRSVHSLSGG 1123

Query: 955  ESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVI 1014
            E+FLVSLALAL L+ + S   +I+SLF+DEGFG+LD E+L  A+DALD L A G+ + VI
Sbjct: 1124 ETFLVSLALALGLASMASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVI 1183

Query: 1015 SHVEAMKERIPVQIKVKKINGLGYSKLE 1042
            SHV+ M ERIPVQI+VK+  G G S LE
Sbjct: 1184 SHVQEMHERIPVQIQVKR-QGNGLSTLE 1210