Pairwise Alignments

Query, 1048 a.a., exonuclease, dsDNA, ATP-dependent from Escherichia coli BL21

Subject, 1018 a.a., exonuclease SbcC, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  255 bits (651), Expect = 1e-71
 Identities = 304/1090 (27%), Positives = 481/1090 (44%), Gaps = 142/1090 (13%)

Query: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60
            MK L L +           IDFT      N LF I GPTGAGKTTLLD I  ALY +T  
Sbjct: 1    MKPLQLSMSAFGPFASTQTIDFTE--LGDNPLFLINGPTGAGKTTLLDGISFALYGKTTG 58

Query: 61   LSNVSQSQNDLMTRDTAE--CLAEVEFEVK--GEAYRA--FWSQNRARNQPDGN-LQVPR 113
                ++ +   M  D A+   L EV F  K    AYR      Q+R +   +G+ +Q   
Sbjct: 59   ----NEREGSQMRCDMADDNLLTEVTFSFKLGNTAYRIRRVPEQDRLKKNGEGSTVQKSE 114

Query: 114  VELARCA-DGK---ILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKER 169
             +L + A DG    ++A KV +       LTGLD  +F + M+L QG+F   L A  K R
Sbjct: 115  AQLFKIAPDGTETLLVASKVSEATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKAR 174

Query: 170  AELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGV----------------ALL 213
             ++  +L  T IY +I  ++  +    R  +++ +A+  G+                + +
Sbjct: 175  EQIFSQLFQTHIYKRIEDILKAKAADIRALVKEQRARRDGILQTAELASDDELAAEFSRI 234

Query: 214  TPEQVQSLTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEE 273
             PE   ++ A  +  T    Q L      QQ     TRL EL+ +A+         L  E
Sbjct: 235  EPELAAAIVAK-ERSTAAHLQALKQHDSAQQRFAEFTRLSELESQAT---------LLHE 284

Query: 274  EKAQ--PQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIR 331
            ++A    Q A L++A+ A+ L+P  +       AL+  ++     + R ++ M L A+  
Sbjct: 285  QQADIAAQTARLNVAKQAQRLKPLLDN------ALSREQEATIANDQRSRAQMVLDAA-- 336

Query: 332  HHAAKQSAELQQQQ-QSLNTWLQEHDRFRQWNNELAGWRAQFS--QQTSDREHLRQWQQQ 388
               A   AE + Q+   L   L+  ++       LA   A+F+  +Q   + ++   Q +
Sbjct: 337  -KLALAKAETEAQELNGLEPRLRTQEQLANSLTSLAPQLAEFADVEQALAKANILLQQTK 395

Query: 389  LTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVA 448
            +   E K    + +    T +    AL Q +E    RQ   A   Q + QQ+ L +L   
Sbjct: 396  VQGQETKTALASLVEQRSTYENQLPALQQQSE----RQLATA---QALQQQRHLLELFKQ 448

Query: 449  IQNVTQEQTQRNAALNEMRQRYKEKTQQ----LADVKTICEQEARIKTLEAQRA----QL 500
             Q +  +  Q   AL     + K    Q    L+D K++     ++   + Q A    +L
Sbjct: 449  WQQICVKVAQTEEALVLAGLQGKTLNAQHQAALSDYKSL-----QLSWFQGQAAILAREL 503

Query: 501  QAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQL 560
            +  +PCP+CGS  HP         P    ++L A +N      E+ +  R +   + KQL
Sbjct: 504  KLEEPCPVCGSIEHPHPATSHDNLP--TDAQLQAAQNAEVNALEQLSKARAEYRGLQKQL 561

Query: 561  QRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQR-H 619
                 EAQ L+ +E A +    AV   L   +Q L+++         H +Q  + +Q   
Sbjct: 562  -----EAQQLQANELA-SSLGDAVELPLESHIQQLEELT-------RHAKQAEVATQALQ 608

Query: 620  ELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQ 679
            +LQ QI A  QQ +   QQ+E  ++              QE E         ++A     
Sbjct: 609  QLQQQIKALQQQELGLTQQLELERERYHQ----------QEGEVARLSGQLAEKALRIPD 658

Query: 680  RQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQ 739
                LTAL   I      LE   ++  L H   T      +Q  E C+A  +  +   Q+
Sbjct: 659  EYRSLTALNQAINDNQQQLE---KTRGLIHALRTAQ----QQASEHCVAAQTALEAAIQR 711

Query: 740  DVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTL 799
               A +    A    ++ L  + F D+ A  AAL+ ++   Q++ L + +E  +RQ    
Sbjct: 712  CHSADELQALALGDLNSQLHLAGFTDRDALGAALLADE---QMQALGERIETYQRQCALN 768

Query: 800  VTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADN 859
             +Q A+   Q       D  AL   + + +Q+L      + E   SQ   R  L +    
Sbjct: 769  QSQLAQLKTQLSDVSVPDLDALEAMLAEKRQQL-----NIAEVAWSQLNTRFSLLK---- 819

Query: 860  RQQQQTLMQQIAQMTQQVEDW----GYLNSLIGSKEGDKF--RKFAQGLTLDNLVHLANQ 913
              Q QT +  + Q  + +ED     G L  +     G+K   ++F   + LD+++  A Q
Sbjct: 820  --QTQTQLSIVDQKAKALEDEYAIIGTLADVANGNTGNKISLQRFVLSVLLDDVLLAATQ 877

Query: 914  QLTRLH-GRYLLQRKASEA-------LEVEVVDTWQADAVRDTRTLSGGESFLVSLALAL 965
            +L  +  GRY L RK   A       LE+EV D + A  VR   TLSGGESF+ +L++AL
Sbjct: 878  RLHLMSKGRYRLLRKEDRAKGNKASGLELEVEDAYTAK-VRPVATLSGGESFMAALSMAL 936

Query: 966  ALSDLVSHKT---RIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKE 1022
             LSD+V       ++D+LF+DEGFG+LD ++L+ A+  L  L ++G+ IGVISHV  MKE
Sbjct: 937  GLSDVVQAYAGGIKLDTLFIDEGFGSLDQDSLELAIRTLMDLQSAGRMIGVISHVSEMKE 996

Query: 1023 RIPVQIKVKK 1032
            +I  +I + K
Sbjct: 997  QINTRIDLLK 1006