Pairwise Alignments

Query, 1048 a.a., exonuclease, dsDNA, ATP-dependent from Escherichia coli BL21

Subject, 1025 a.a., DNA repair exonuclease from Cupriavidus basilensis FW507-4G11

 Score =  236 bits (602), Expect = 6e-66
 Identities = 291/1101 (26%), Positives = 444/1101 (40%), Gaps = 139/1101 (12%)

Query: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60
            M+ L L+L+         +IDFTR        F I GPTGAGKTTLLDAIC ALY +T  
Sbjct: 1    MRPLRLKLQAFGPFAASEEIDFTR--LGERAFFLIHGPTGAGKTTLLDAICFALYGDTSG 58

Query: 61   LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWS--QNRARNQPDGNL-QVPRVELA 117
                +Q                 EF + G+ Y A  S  Q R + + +G + + P+ +L 
Sbjct: 59   GERSAQDMRSANADPALRTEVTFEFSLGGQRYLATRSPAQERPKLRGEGTVKETPKAQLD 118

Query: 118  RCADGKILA-----DKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAEL 172
               D    +     +KV D       L G D  +F + ++L QG+F   L A  K R  +
Sbjct: 119  VMGDAGWTSKASQPNKVDD---FVRNLLGFDSSQFRQVIVLPQGRFRELLTADSKSRQAI 175

Query: 173  LEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVA----LLTPEQVQSLTASLQVL 228
            LE L  TE+Y ++  ++  Q    R E E+L+ + + +     L + + ++   A LQ  
Sbjct: 176  LERLFHTELYRRVEELLKGQAAGIRQEAERLRIEQTALLQQYQLASVDALREQAAGLQAQ 235

Query: 229  TDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQA----LAEEEKAQPQLAALS 284
              E +Q   A +   +     TR  E      R Q+  + A    +A+  + + Q   L 
Sbjct: 236  LAELRQRDVAARTALEVATLATRQGEQTDARLREQRDTETAHAALMAQRPEMEAQRQRLQ 295

Query: 285  LAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHAAKQSAEL--- 341
             A+ A  ++P  + + +        +Q +   + R  +  AL A+       ++A     
Sbjct: 296  AARRAMQVQPFEQHLGQAVQEHQQAQQALAAASARSAACAALSATAAAGLEAEAARAGER 355

Query: 342  ---QQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNA 398
               Q+Q   L   L +  R      ELA    Q +Q  +      Q QQQ          
Sbjct: 356  QAAQKQVTELEAMLPQAQRLGVLQQELAAAARQQAQAGAAHAGALQAQQQ---------- 405

Query: 399  LAAITLTLTADEVATALAQHAEQ--RPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQ 456
               +T TL   E   A AQ   +    ++  L  L  Q     K  A L         EQ
Sbjct: 406  ---VTATLRQAEAGLAQAQEGARGLETIQLKLAGLAQQATTLDKYAATLAQC------EQ 456

Query: 457  TQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQR--AQLQAGQPCPLCGSTSH 514
              R A +++   R +  TQQ A +  + E E   +  +A R  A LQ GQ C +CGST+H
Sbjct: 457  AGRQADVDQRAAR-QAATQQAASLARLRETEQAWRAGQAARLAAGLQDGQACAVCGSTAH 515

Query: 515  PAVEAYQALEPGVNQSRLLALENEVKKLGEE---GATLRGQ---LDAITKQLQRDENEAQ 568
            P +  +      +     L L  E  +L ++   GA  R Q   L A  +Q Q DE    
Sbjct: 516  PRLAQHV---DALVSDEALDLAREAARLADQAAQGAASRAQGALLAATHRQEQLDE---- 568

Query: 569  SLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAH 628
             LR+   A+     A                    AQD         + R +L G I A 
Sbjct: 569  -LREAAGAVGMPEGA--------------------AQDP-------AAARQQLAGAIQAL 600

Query: 629  NQQIIQYQQQIEQRQQLLLT-------TLTGYALTLPQEDEEESWLATRQQEAQS-WQQR 680
             QQ  Q  Q    R QLL T        LT     +   D        R  + Q  WQ  
Sbjct: 601  RQQQ-QAAQAAAGRCQLLATEVERQQAALTAAEAAIRAADAAAQDAGQRHAKLQGEWQAA 659

Query: 681  QNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQD 740
              ++   +   ++LT  L    +                +Q      A  + Q   Q   
Sbjct: 660  SAQVPPDRREPERLTAALAQARRDLAAREAALAAAQAADKQAGVGLAAALAAQAAAQASL 719

Query: 741  VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLV 800
               A    +A   F +AL+ + F  ++A+  A M    + Q E      +     A    
Sbjct: 720  ATHATRQTQADTAFASALEQAGFVSREAYAEARMPGAQMEQAEAQVNRFDLDLAAAGDRR 779

Query: 801  TQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQ--LKQDAD 858
             + A  +A      PD        + Q Q + A   + L         +RQQ  L +  +
Sbjct: 780  ERAA--IAARDLAPPD-----LAALRQAQADAAGALEAL---------VRQQADLHRSRE 823

Query: 859  NRQQQQTLMQQIAQMTQQVE-DWGYLNSLIGSKEGDK-----FRKFAQGLTLDNLVHLAN 912
            N  Q Q  +  +A     +E  +  L  L     G+      F++F     LD ++  A+
Sbjct: 824  NLLQCQQRLDALASKGADIERSYAVLGRLAEVANGNNPRRMTFQRFVLATLLDEVLEAAS 883

Query: 913  QQLTRL-HGRYLLQR-------KASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALA 964
             +L R+   RY LQR       + +  L++EV D       R   TLSGGE FL SL+LA
Sbjct: 884  LRLMRMSRNRYELQRVRQQGDQRTAGGLDLEVFDH-DTGMARPANTLSGGEGFLASLSLA 942

Query: 965  LALSDLVSHKT---RIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK 1021
            L L+D+V  +    ++D+LF+DEGFGTLD E+LD A+  L  L  +G+ +G+ISHV  ++
Sbjct: 943  LGLADVVQSRAGGIQLDTLFVDEGFGTLDPESLDFAIRTLIDLQHAGRLVGIISHVAELR 1002

Query: 1022 ERIPVQIKVKKINGLGYSKLE 1042
            ERI V+++++   G G S+ E
Sbjct: 1003 ERIDVRLEIRA--GAGGSRAE 1021