Pairwise Alignments

Query, 303 a.a., nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function from Escherichia coli BL21

Subject, 304 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  303 bits (777), Expect = 2e-87
 Identities = 155/298 (52%), Positives = 208/298 (69%)

Query: 2   LWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVAN 61
           +WFKNL +YR ++  S+  E +E  LA   F+PCGSQD++K G+   +G     L H AN
Sbjct: 1   MWFKNLTLYRFNKPFSIETEALETALADFTFSPCGSQDVSKFGFSNALGKKGSTLVHSAN 60

Query: 62  GQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFS 121
            + +IC  KEEKILP+ VIK++LE K+A++E E+ RKL K EKD+LKDE++ SLLPRAFS
Sbjct: 61  NRHLICVTKEEKILPAQVIKESLEEKVAQIEDEENRKLAKKEKDALKDEIITSLLPRAFS 120

Query: 122 RFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVR 181
           R SQT   I     +I+VD +SA KAE+ LALLRK+LGSLPV+PLS + PIE  LTEW++
Sbjct: 121 RRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSLPVIPLSFKAPIESQLTEWLK 180

Query: 182 SGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQ 241
           +GSA   F++ DEAELKS  ++GG++R K+QDL  +E+  H+E GK V KLAL + Q I 
Sbjct: 181 NGSAPLPFEMQDEAELKSAADEGGIVRFKQQDLKEDEVLAHLETGKEVHKLALHFGQSIA 240

Query: 242 FVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGG 299
            ++  D S+KRLKF +E R  N+++  ED   R DADF LM  EL AL+  L+  LGG
Sbjct: 241 LLLQSDASVKRLKFSEEFRAGNDELGNEDPMARLDADFALMGSELVALMHALVSALGG 298