Pairwise Alignments

Query, 474 a.a., serine endoprotease (protease Do), membrane-associated from Escherichia coli BL21

Subject, 478 a.a., Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain from Xanthomonas campestris pv. campestris strain 8004

 Score =  337 bits (865), Expect = 4e-97
 Identities = 206/459 (44%), Positives = 275/459 (59%), Gaps = 35/459 (7%)

Query: 25  TAAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQ 84
           TAA   +A   Q +PSLAPML++ MP+VVS+N +    V  P        FF D  P  +
Sbjct: 46  TAATLPAAVAGQPVPSLAPMLQQAMPAVVSVNTKQVVRVRNP--------FFND--PILR 95

Query: 85  EGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLS 144
               F   P            Q +   +LGSGVIIDA KGYV+TN+HV++NA  ++V L 
Sbjct: 96  R--LFPEIP------------QDRINESLGSGVIIDAQKGYVLTNHHVIENADDVQVTLG 141

Query: 145 DGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVT 204
           DGR   A  +G D  +DIALI+I+   NLT IK+ADS+ALRVGD+ VAIGNPFG  +TVT
Sbjct: 142 DGRTVKADFIGSDADTDIALIRIK-ADNLTDIKLADSNALRVGDFVVAIGNPFGFTQTVT 200

Query: 205 SGIVSALGRSGLNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDG---GN 261
           SGIVSA+GRSG+    Y+NFIQTDA+IN GNSGGALVNL G+L+GINTA   P G   GN
Sbjct: 201 SGIVSAVGRSGIRGLGYQNFIQTDASINPGNSGGALVNLQGQLVGINTASFNPQGSMAGN 260

Query: 262 IGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLP 321
           IG+G AIPSN+ +N+  Q+V  G V RG LG+    L  ++ + + VD+ RGA V++VLP
Sbjct: 261 IGLGLAIPSNLARNVVEQLVTKGVVVRGTLGLETQNLTQQMLQGLGVDSLRGALVTRVLP 320

Query: 322 NSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 381
            S+AA AG++ GDVI + N + + S  AL    G   VGS +TL + RDGK + +   L+
Sbjct: 321 GSAAAAAGVQPGDVIVAANDQRVDSAQALHNYEGLQAVGSAVTLDIRRDGKPLKLKATLK 380

Query: 382 QSSQNQVDSSSIFNGIEGA------EMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIG 435
           +  +  V    +   + GA      E   +    GV+V+ VK G  AA  GL  GDVI+ 
Sbjct: 381 EQDRT-VTGDMLDPRLGGATFVDLPESLRQSGVTGVMVSEVKRGGRAAANGLVSGDVIVA 439

Query: 436 ANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ 474
           ++     ++A  R     KP  L L I RG++    LM+
Sbjct: 440 SSVGEFADLASWRANFQRKPQQLVLRILRGNAQYDALMR 478