Pairwise Alignments

Query, 476 a.a., putative transporter from Escherichia coli BL21

Subject, 453 a.a., sodium:alanine symporter family protein from Methanococcus maripaludis S2

 Score =  286 bits (733), Expect = 8e-82
 Identities = 178/445 (40%), Positives = 247/445 (55%), Gaps = 24/445 (5%)

Query: 3   DFFSFINSV---LWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSL--KNSIHPQPGG 57
           DF S +N+V   +WG  M+ LL G G + T R GF+Q   +    K    K+      G 
Sbjct: 2   DFVSLVNTVNSFVWGPYMLVLLLGTGIFLTLRLGFMQIHTLPYALKLAFSKHQDETSEGD 61

Query: 58  LTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYK 117
           ++ FQ+L T+LAA +G+GN+AGVA A   GGPGA+FWMWV AF GMAT +AE  LA  Y+
Sbjct: 62  ISHFQALMTALAATIGTGNIAGVATAYVLGGPGAIFWMWVTAFFGMATKYAEAVLAIKYR 121

Query: 118 ERDANGQFRGGPAWYMARGL---GM-RWMGVLFAVFLLIAYGIIFSGIQANAVARALSFS 173
             D NG+  GGP +++ +GL   G+ + +GV FA F   A   I + +Q N+VA A++ +
Sbjct: 122 TVDDNGEMAGGPMYFLEKGLPDHGLGKILGVAFAFFGAFAAFGIGNMVQTNSVADAVASN 181

Query: 174 FDFPPLVTGIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHV 233
           F   PL+TG +LA+F    I  G+  + +     VP MA+ ++L  LVI  MNIG +   
Sbjct: 182 FGVDPLITGFVLAIFTAAVILGGIKSIGKATGIIVPFMAVFYILAGLVILAMNIGYIIPA 241

Query: 234 IWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPA 293
             +IF SAF +    G   G     AI  G +R +FSNEAG+GS P AAAAA +   HP 
Sbjct: 242 FGTIFSSAFNFSAGFGALIG----TAIMWGVKRGVFSNEAGLGSAPIAAAAAKT--DHPG 295

Query: 294 AQGIVQMIGIFIDTLVICTASAMLILLAG----NGTTYMPLEGIQLIQKAMRVLMGSWGA 349
            Q +V M G F+DT+V+CT + +++ +AG     G T   L G  L   +   LM   G 
Sbjct: 296 RQALVSMTGTFLDTIVVCTITGLVLTIAGLKAFPGLT--DLTGASLTAASFDALM-PMGG 352

Query: 350 EFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMW 409
             VT+ ++ FA+S+++    Y E    F  L   K I   RI        G   SLPL+W
Sbjct: 353 LIVTIGLVFFAYSTVLGWSYYGEK--CFEYLIGTKGIRLYRIAFVLVAFWGATASLPLVW 410

Query: 410 QLADIIMACMAITNLTAILLLSPVV 434
            +AD +   MAI NL  +LLLS VV
Sbjct: 411 NIADTLNGAMAIPNLIGLLLLSGVV 435