Pairwise Alignments

Query, 507 a.a., DNA-binding protein from Burkholderia phytofirmans PsJN

Subject, 477 a.a., HTH-type transcriptional regulatory protein GabR from Pseudomonas sp. DMC3

 Score =  275 bits (702), Expect = 3e-78
 Identities = 169/460 (36%), Positives = 245/460 (53%), Gaps = 24/460 (5%)

Query: 20  GAKPEPLQKQLLERLQQAILAGRLPAGSLLPSSRLLAAEMGVSRNTVVIAYEHLAAVGYV 79
           G    PL +QL +R+  AI AG L  G  LPS R LA ++GV+R T+ +AY  L + GY+
Sbjct: 13  GQPGSPLYRQLYDRVLAAIAAGTLSPGDRLPSVRALAKDLGVARGTIELAYSLLTSEGYL 72

Query: 80  VA-DKKGTRVSP------LSSPSARGEPPSQPAAPDVAYASRVGQFAATRTHADNTFPLT 132
           +A  +KGT V+P      LS+P+          +PD  +                  P  
Sbjct: 73  LALGQKGTVVNPELQKPLLSAPALSVSSEVIENSPDALW------------RPPQLLPFQ 120

Query: 133 PGTPALDRFPLTAWRRALERSMERASPLALGYGTPAGEPALRDAIAAHLRMARGVRCEGS 192
            G PA+D FP   W R   R +       L Y  P G PALR AIA++L+++RG+ C   
Sbjct: 121 MGVPAMDEFPRKIWARLGARYLRGMRSGDLDYPPPHGLPALRSAIASYLQVSRGIDCGAH 180

Query: 193 QVVITEGAQEALNLCVRLFSNPGDVAWVEDPGYRGAKAAFNLGDLATLPIPVDAEGMAVP 252
           QV IT G + +L+L        G+ AWVEDPGY   +       +    +PVDAEGM V 
Sbjct: 181 QVFITSGWRSSLSLIAHTLLRAGERAWVEDPGYPTTRQVLRQFGIELEAVPVDAEGMDVE 240

Query: 253 SDAWRTQPPKLIYTSPAHQYPTGSVLSVARRLELIAQARRSGAWLIEDDYDGEFRHTGEP 312
               R Q  +++  +P HQ P    LS+ RR  L+    RS AW++EDDYDGE+R+   P
Sbjct: 241 QAIARHQAAQVVMVTPGHQSPLCMALSLPRRQLLLDWVARSDAWVVEDDYDGEYRYVSRP 300

Query: 313 IASMQGLVEDAPVLYVGSFSKTMFPALRIGFVVLPQ-PIAAHTAIAVQEMLRGGHRLEQL 371
           + ++  L  +  VLY G+FSK +FP +R+ ++V+PQ  +AA   ++      G   + Q 
Sbjct: 301 LPALASLDRNGRVLYAGTFSKVLFPGIRLAYLVVPQGQVAAFERVSRALFSAGSPAITQA 360

Query: 372 ALAHFIESGEFGRHLGRMRRLYRERQQALRDALTEHFAPSQILGGNC--GMHLTLRLPPR 429
            +A FI  G F RH+ RMRRLY ER+    +AL E   P+ +L      GMHL LRLP  
Sbjct: 361 LVAEFIVEGHFTRHIQRMRRLYSERRALTIEAL-ERSLPNGLLVERSPGGMHLVLRLPEG 419

Query: 430 IDDRTLAERALAQGLNPRALSGFALQPRAETNGLVIGYGN 469
           + D  L E+ LA+G+  + LS +++  R + +GL++ + N
Sbjct: 420 VVDTALTEQLLAKGIAVQPLSRWSVSSRRQ-SGLLLSFTN 458