Pairwise Alignments

Query, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score =  587 bits (1513), Expect = e-172
 Identities = 315/622 (50%), Positives = 422/622 (67%), Gaps = 17/622 (2%)

Query: 48  ERQRQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAE 107
           ++Q +++ LI LG+EQGYLT+A++NDHLP++ +    ++ I+   NDMG+ V+E APD +
Sbjct: 6   QQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEAAPDKD 65

Query: 108 TLLLNSNAPAVVSDDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEIAI 167
           +L+L        +D+ A EE   AL+ V+++ GRTTDPVRMYMREMG  ELLTR GEI I
Sbjct: 66  SLMLAD----ADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEI 121

Query: 168 AKRIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVDGL--NEDTLAAEEDST 225
           AKRIE+G+ E++ AIA  P  +  IL+   +V     R+ +++ G    +D +A      
Sbjct: 122 AKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPP---- 177

Query: 226 GADASADVDADTDSDDDEDSDDDVGPADSSAADEARLKQLTSDCLEIFAQVGMLSDQMNA 285
            A+    VDA     DD+  DDD   A++S  DE  ++    D +    + G +SDQM  
Sbjct: 178 AAEVPPPVDAKAAKADDDTEDDD---AEASGDDEDEVES-GPDPIIAAQRFGAVSDQMEI 233

Query: 286 SHTRGDVTSKAYQRAREEI---QQHLAKIRFTARTIDRLCGDVQQQVAQVRAIERNILQI 342
           +        +A ++A  E+    +    I+   +  + L   V+  + ++RA ER I+Q+
Sbjct: 234 TRKALKKHGRANKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQL 293

Query: 343 VVSKSGMPREKFIESFAGHEADLGWTERAARGASSYGAALERHLPAIQSEQQKLIEIEAT 402
            V  + MPR  F+  F G+E D  WT+  A+G + Y  A+ R  P I   QQKL  +E  
Sbjct: 294 CVRDARMPRADFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETE 353

Query: 403 VSLPLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNI 462
             L +  +K+INR+M   E+K R+AK EM+EANLRLVISIAKKY NRG+ FLDLIQEGNI
Sbjct: 354 TGLTIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 413

Query: 463 GLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISREI 522
           GLMKAVDKFEYRRG+KFSTYATWW+RQA+TRS+ADQARTIR+PVHMIETINKLNRISR++
Sbjct: 414 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 473

Query: 523 LQQTGQEAHPSVLAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASS 582
           LQ+ G+E  P  L ERME+ E+K+R +LKIAK+P+SMETP+GDD D+ LGD IEDS   S
Sbjct: 474 LQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQS 533

Query: 583 PADAAMQADLRAAIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQI 642
           P D A    L+ A  D L  L+ REAKVLRMR+GI+  +DHTLEEVGKQFDVTRERIRQI
Sbjct: 534 PIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI 593

Query: 643 ESKAMRKLMHPSRADRLKSFLD 664
           E+KA+RKL HP+R++ L+SFLD
Sbjct: 594 EAKALRKLRHPTRSEHLRSFLD 615