Pairwise Alignments

Query, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  579 bits (1493), Expect = e-169
 Identities = 314/625 (50%), Positives = 420/625 (67%), Gaps = 23/625 (3%)

Query: 48  ERQRQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAE 107
           ++Q +++ LI  G+EQGYLT+A++NDHLP++ +    ++ I+   NDMG+ V+E APDA+
Sbjct: 6   QQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDAD 65

Query: 108 TLLLNSNAPAVVSDDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEIAI 167
            LLL        +D+ A EE   AL+ V+++ GRTTDPVRMYMREMG  ELLTR GEI I
Sbjct: 66  ALLLAE----ADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEI 121

Query: 168 AKRIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVDGL--NEDTLAAEEDST 225
           AKRIE+G+ E++ AIA  P  +  IL    +V     R+ +++ G    +D +AA  +  
Sbjct: 122 AKRIEEGIREVMGAIAHFPGTVDYILGEYDRVTTEGGRLSDVLSGYIDPDDNIAAPTEEV 181

Query: 226 GADASADVDADTDSDDDEDSDDDVGPADSSAADEARLKQLTSDCLEIFAQVGMLSDQMNA 285
               +    A  +SDDDE+        +S + D+    +   D +    + G +SDQ+ A
Sbjct: 182 PIPGAKAAAAKEESDDDEE--------ESESGDDEEEAESGPDPVVAAQRFGAVSDQLQA 233

Query: 286 SHTRGDVTSKAYQRAREEIQ--QHLAK----IRFTARTIDRLCGDVQQQVAQVRAIERNI 339
           +     V  K  +  +E I+  Q LA     I+   +  + L   V+  + ++R  ER I
Sbjct: 234 T---SKVLKKNGRNHKESIEALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAI 290

Query: 340 LQIVVSKSGMPREKFIESFAGHEADLGWTERAARGASSYGAALERHLPAIQSEQQKLIEI 399
           +Q+ V  + MPR  F+  F  +E D  W+   A+  + + AAL     AI + QQKLI++
Sbjct: 291 MQLCVRDARMPRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKNAAIVACQQKLIDL 350

Query: 400 EATVSLPLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQE 459
           E    L +  +KEINR+M   E+K R+AK EM+EANLRLVISIAKKY NRG+ FLDLIQE
Sbjct: 351 ETETGLTVAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE 410

Query: 460 GNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRIS 519
           GNIGLMKAVDKFEYRRG+KFSTYATWW+RQA+TRS+ADQARTIR+PVHMIETINKLNRIS
Sbjct: 411 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS 470

Query: 520 REILQQTGQEAHPSVLAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSA 579
           R++LQ+ G+E  P  L ERME+ E+K+R +LKIAK+P+SMETP+GDD D+ LGD IEDS 
Sbjct: 471 RQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDST 530

Query: 580 ASSPADAAMQADLRAAIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERI 639
             SP D A    L+ A  D L  L+ REAKVLRMR+GI+  +DHTLEEVGKQFDVTRERI
Sbjct: 531 MQSPIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 590

Query: 640 RQIESKAMRKLMHPSRADRLKSFLD 664
           RQIE+KA+RKL HP+R++ L+SFLD
Sbjct: 591 RQIEAKALRKLRHPTRSEHLRSFLD 615