Pairwise Alignments

Query, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

Subject, 738 a.a., RNA polymerase sigma factor RpoD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  689 bits (1778), Expect = 0.0
 Identities = 349/624 (55%), Positives = 457/624 (73%), Gaps = 12/624 (1%)

Query: 41  LPPQQAEERQRQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVY 100
           L  ++A  R+ +++ LI+LGK +GYLTH +INDHLPD   +   ++ +VS  NDMGV VY
Sbjct: 125 LSEEEARNRRERLKTLIKLGKTRGYLTHGEINDHLPDKLVEAETLEVVVSLLNDMGVAVY 184

Query: 101 EQAPDAETLLLNSNAPAVVSDDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLT 160
           EQ PDAETLLLN+  P   ++++A+EE E ALSTVDSEFGRTTDPVRMYMREMG  ELLT
Sbjct: 185 EQTPDAETLLLNNTGPTAATEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLT 244

Query: 161 RAGEIAIAKRIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVDGLNEDTLAA 220
           R GEI IAKRIE GL++M+ AI+  P  I+ IL  A+ + +G++ I  +VDG  +     
Sbjct: 245 REGEIEIAKRIEGGLNDMMAAISESPATIAEILVMAEDIREGKVVISTVVDGFAD----- 299

Query: 221 EEDSTGADASADVDADTDSDDDEDSDDDVGPADSSAADEARLKQLTSDCLEIFAQVGMLS 280
                 AD + D  A+ D DD +++DDD G   S A    +L++L  + L  F  +  L 
Sbjct: 300 ------ADEADDYVAEEDFDDYDEADDDDGKGGSKALTR-KLEELKREALSRFDNMRTLF 352

Query: 281 DQMNASHTRGDVTSKAYQRAREEIQQHLAKIRFTARTIDRLCGDVQQQVAQVRAIERNIL 340
           ++++  + +    +  Y + +  I + L  IRFTA+ I++LCG ++ QV  VR  ER + 
Sbjct: 353 EKLHKIYDKEGYGTPGYLKTQTSITETLMSIRFTAKAIEKLCGTMRSQVDDVRKKERELR 412

Query: 341 QIVVSKSGMPREKFIESFAGHEADLGWTERAARGASSYGAALERHLPAIQSEQQKLIEIE 400
           +I+V K GMP+E FI+ F  +  +L W E+ A     +   +ER++P +Q  QQ LI I+
Sbjct: 413 RIIVDKCGMPQETFIKEFPPNLLNLKWVEKQAAAGKPWSVVIERNIPPVQELQQGLINIQ 472

Query: 401 ATVSLPLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEG 460
           A+V +PL HLK+I+++M   ES  R AK EMIEANLRLVISIAKKY NRG+ FLDLIQEG
Sbjct: 473 ASVVVPLTHLKDIHKRMNQGESTSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEG 532

Query: 461 NIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISR 520
           NIGLMKAVDKFEYRRG+KFSTYATWW+RQA+TRS+ADQARTIR+PVHMIETINK+NRISR
Sbjct: 533 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR 592

Query: 521 EILQQTGQEAHPSVLAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAA 580
           + LQ+ G E   S+LAE+ME+ E+K+R I+KIAK+P+SMETP+GDD D+ LGD IED A 
Sbjct: 593 QHLQEFGFEPDASILAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDQAN 652

Query: 581 SSPADAAMQADLRAAIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIR 640
           ++P +AAMQA LR  + + LDSL+PREAKVLRMR+GI   +DHTLEEVGKQFDVTRERIR
Sbjct: 653 TAPIEAAMQAGLREVVKEILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIR 712

Query: 641 QIESKAMRKLMHPSRADRLKSFLD 664
           QIESKA+RKL HPSR+D+L+SF+D
Sbjct: 713 QIESKAVRKLKHPSRSDKLRSFID 736