Pairwise Alignments

Query, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

Subject, 613 a.a., RNA polymerase, sigma 70 (sigma D) factor from Escherichia coli BL21

 Score =  581 bits (1498), Expect = e-170
 Identities = 314/622 (50%), Positives = 416/622 (66%), Gaps = 22/622 (3%)

Query: 50  QRQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAETL 109
           Q Q++ L+  GKEQGYLT+A++NDHLP++   +  I+ I+   NDMG+QV E+APDA+ L
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65

Query: 110 LLNSNAPAVVSDDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEIAIAK 169
           +L  N     +D+ A E     LS+V+SE GRTTDPVRMYMREMG  ELLTR GEI IAK
Sbjct: 66  MLAENT----ADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121

Query: 170 RIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVDGL----NEDTLAAEEDST 225
           RIEDG++++  ++A  P AI+ +L    +V   E R+ +L+ G      E+ LA      
Sbjct: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181

Query: 226 GADASADVDADTDSDDDEDSDDDVGPADSSAADEARLKQLTSDCLEIFAQVGMLSDQMNA 285
           G++ S +   D + +D+ED DDD    D+S   E   ++      E+ AQ  +  D + A
Sbjct: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFA----ELRAQYVVTRDTIKA 237

Query: 286 SHTRGDVTSKAYQRAREEI---QQHLAKIRFTARTIDRLCGDVQQQVAQVRAIERNILQI 342
                    +++  A+EEI    +   + R   +  D L   ++  + +VR  ER I+++
Sbjct: 238 K-------GRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKL 290

Query: 343 VVSKSGMPREKFIESFAGHEADLGWTERAARGASSYGAALERHLPAIQSEQQKLIEIEAT 402
            V +  MP++ FI  F G+E    W   A      +   L      +    QKL +IE  
Sbjct: 291 CVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEE 350

Query: 403 VSLPLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNI 462
             L ++ +K+INR+M   E+K R+AK EM+EANLRLVISIAKKY NRG+ FLDLIQEGNI
Sbjct: 351 TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 410

Query: 463 GLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISREI 522
           GLMKAVDKFEYRRG+KFSTYATWW+RQA+TRS+ADQARTIR+PVHMIETINKLNRISR++
Sbjct: 411 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 470

Query: 523 LQQTGQEAHPSVLAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASS 582
           LQ+ G+E  P  LAERM + E+K+R +LKIAK+P+SMETP+GDD D+ LGD IED+    
Sbjct: 471 LQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 530

Query: 583 PADAAMQADLRAAIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQI 642
           P D+A    LRAA  D L  L+ REAKVLRMR+GI+  +DHTLEEVGKQFDVTRERIRQI
Sbjct: 531 PLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI 590

Query: 643 ESKAMRKLMHPSRADRLKSFLD 664
           E+KA+RKL HPSR++ L+SFLD
Sbjct: 591 EAKALRKLRHPSRSEVLRSFLD 612