Pairwise Alignments

Query, 663 a.a., Fis family transcriptional regulator from Burkholderia phytofirmans PsJN

Subject, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

 Score =  427 bits (1099), Expect = e-124
 Identities = 257/646 (39%), Positives = 372/646 (57%), Gaps = 42/646 (6%)

Query: 29  IAGEYVERADLRI------VSHGFEDAVREIDAAGAGRPDVVIAGGSNGAYLKTRVSVPV 82
           +AG   +  D RI      V+   + A RE++ AG  + DV +  G+  AYL+  ++ PV
Sbjct: 28  VAGLTTDYPDTRIEVLDTSVAEALQTA-RELEQAG--KVDVFVCAGATAAYLRKHLTRPV 84

Query: 83  VLIGPTGFDVMHALARARRDGAKVALVTHGNTPDEVRRFVAAYALDVTFASYQSAQHAES 142
           + +     D++ AL +AR   ++VA++++ +   +++   A + + V  A+Y S + A  
Sbjct: 85  LAMRVGSGDLLRALGQARERSSQVAVLSYNHVNHDLQAMAALFTVQVHQAAYTSLEEARQ 144

Query: 143 VVLDLRDRGIDVVVGPGMVTDLAANAGMGAVFLYSRASVRAAFDTALEVAQATRRETIRR 202
            V      G   ++G   V +LA  AG+  V   S  + R A + AL +    R E  +R
Sbjct: 145 AVEQAAQLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEALGILDTQRVEIAKR 204

Query: 203 QRLDNLLQHLRDGVVALDAQGRVEAMNQRLAGVLGLEAAKAVGRVLLELAP--DLAGSLP 260
           + L+ +L+H+  GV A+D QG V+++N  LA +L L  + A+GR L +L P  DL  +L 
Sbjct: 205 RHLNAVLRHIPAGVAAVDNQGVVQSLNPALAQLLDLPVSAALGRPLQQLCPELDLQQALQ 264

Query: 261 DADGDALCTVRGVSYVVHRG--PLASSSAAAGTVLTFQESRAVERLDRTLRSRQRVQQFS 318
           +  G+    +R  S+ V     P+  +    G VLT Q+   V+R D+ +RS +R   F+
Sbjct: 265 EGTGEENRVMRLGSHAVVSNLLPILENGERTGLVLTCQDITVVQRADQRIRSTRRPGAFT 324

Query: 319 ARYRLDDIVGASDSIERVRALVRRYARSDATVLILGESGTGKEMVAQSMHQLSPRRDFAF 378
           ARYRLD + G S +   +  L +R+A S +T+LI GESGTGKE++AQ +H  SPRR   F
Sbjct: 325 ARYRLDQLNGNSKANREMLQLAKRFATSHSTILITGESGTGKELLAQGIHNESPRRQGPF 384

Query: 379 VAINCGAFPEALLESELFGYEEGAFTGARKGGKAGLIEVAHRGTLFLDEIGEMPLSLQSR 438
           VAINC AFPE+LLESELFGYEEGAF+G+RKGGK GL E AHRGTLFLDEIG+MP+SLQ+R
Sbjct: 385 VAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTR 444

Query: 439 LLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTEGIEAGSFRADLYYRLNILSIALPPL 498
           LLRVLQEREV+RLGSTEP  +D+R++AATH+ L   ++ G FR DLY+RLNIL +   PL
Sbjct: 445 LLRVLQEREVLRLGSTEPIAIDVRIIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPL 504

Query: 499 RERPTDLLPLAVELLLQAAAREPRLAARLPDAAAAERLLATLAEPLKRYAWPGNVRELQN 558
           RERP D     + L+ +  ++   +  + P AA    + A L   L+RYAWPGNVREL+N
Sbjct: 505 RERPED-----IALICRGISQRLLVQGQPPGAA---DIPAALLPYLERYAWPGNVRELEN 556

Query: 559 VIERIAVELADVDVDADANADVGAISAGAAAPVLTRDMLRTVAPEIVE-----PHARTKK 613
           VIER  +   ++  +   N                   L  V PE+ E     P  +   
Sbjct: 557 VIERAMLSARELLEEHRVN----------------EQYLARVLPELCEGPPPSPARKKSS 600

Query: 614 AALTLRERSRHVEADEIRAALAAHDGDRDAVCEALGISKTTLWRKL 659
               L    +  +   ++  L +  G+ D     LGIS+TTLWR+L
Sbjct: 601 GETDLHTIGKVAQLRHVKETLESCRGNLDEAARRLGISRTTLWRRL 646