Pairwise Alignments

Query, 498 a.a., RND transporter from Burkholderia phytofirmans PsJN

Subject, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

 Score =  277 bits (709), Expect = 5e-79
 Identities = 169/482 (35%), Positives = 258/482 (53%), Gaps = 18/482 (3%)

Query: 1   MKRVAACRALTTLASAALLAACTVGPNYERPQAE-VPPTWQTDSYWRVAVPSHAPISPDW 59
           + R    R L      ALL+ACT+ P+Y RP+       ++    W  A PS A     W
Sbjct: 15  LTRGRGSRLLGAGLCVALLSACTLSPDYHRPELNSTAAQFKHAEGWTQASPSDAIARGAW 74

Query: 60  WNAFSDPTLATLETQALAQNQTLVAASAHYEQARATLANDRAQQIPEVDLAAQGSRFRIS 119
           W  + D  L  L  +    NQT+  + A Y QA+A + + RA   P +DL+        S
Sbjct: 75  WEIYGDAGLNALVEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLST-------S 127

Query: 120 QNRPRTNYGTPTTSTVQN--------NVQLGPTISYDTDLFGRIRREVEGAAASAQQSAD 171
           +NR     G+ ++S   N        N QLG  +S++ DL+G++R  +    ASA+ S  
Sbjct: 128 KNRSAQGTGSSSSSLSNNSSGIRNTYNAQLG--VSWEIDLWGKLRETLNANEASAEASFA 185

Query: 172 DLANARLVLTTDLASDYFSLRELDAEIDVLNQSVKLQQKALDYVTTEHDLGSVSGLDVLQ 231
           DLA+ RL   ++L  +Y  LR +D +  +L  +V   +++L     ++  G      V Q
Sbjct: 186 DLASIRLSQQSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQ 245

Query: 232 QKSLLDSTRVQAQLLLNQRAQFEHAIAALVGVPAPQFSIEPKVLAVQVPAIALGVPSDVL 291
            ++ L ST+     L+ QRAQFE+AIA L+G     F++        +P I + +PS +L
Sbjct: 246 ARTQLKSTQADLIDLIWQRAQFENAIAVLLGKAPADFALADSKAIPALPQIPVSLPSQLL 305

Query: 292 QRRPDVASAERAMAAANAQIGVAKAAFFPSLTLAPSIGWESTQFASLLSAPTLMWTLGAA 351
           +RRPD+A+AER + AANA IGV++AA+FP L+L+ S G+ S+ F++ +  P   W++G  
Sbjct: 306 ERRPDIAAAERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQ 365

Query: 352 VGQVLFDGGRRAANVKFASEGYKATEANYRQTVLTAFQQVQDGITGLSVLDGAAKQSSEA 411
           +   LFD G+R+A V      Y  T A YRQTVL  F++V++ +  L V    A    EA
Sbjct: 366 LALTLFDAGKRSAEVDRTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEA 425

Query: 412 VTDARHLLALANDRYSGGLVAYLDVITAQQSLLTSERQDVQIHGQQMTLSVSLVKALGGG 471
           +  AR  L L  ++Y  GL+ YLDV+  Q + L++ER  + +   ++  SV LV ALGGG
Sbjct: 426 LDAARESLRLTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGG 485

Query: 472 WD 473
           WD
Sbjct: 486 WD 487