Pairwise Alignments

Query, 381 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

Subject, 352 a.a., DNA polymerase IV from Pseudomonas simiae WCS417

 Score =  149 bits (376), Expect = 1e-40
 Identities = 105/362 (29%), Positives = 177/362 (48%), Gaps = 39/362 (10%)

Query: 5   RRIAHIDMDAFFASCELSQYPELRGQAMVVAGRRSDAPRVNADGTREFARLRDYAGRGVL 64
           R+I H+D D F+A+ E+   P L  + + V G        +AD             RGV+
Sbjct: 4   RKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGG--------SADR------------RGVI 43

Query: 65  TTATYEARAFGVHSGMPTMQAARLAPDAILLPVNFDLYRTYSRLFKDAIRSVSPTIEDVG 124
            T  YEARA+GV S M +  A +L PD  ++    + Y+  S+  +   R  +  IE + 
Sbjct: 44  ATCNYEARAYGVRSAMSSRHALKLCPDLTIVKPRMEAYKEASKEIQTIFRDYTDLIEPLS 103

Query: 125 IDEVYADLS---LLNDESEQIARKLKSAVFEATNLTCSVGIAPNKLLAKLCSDIQKPDGI 181
           +DE Y D+S        + +IA+ ++  V    ++T S G+APNK LAK+ SD +KP+G+
Sbjct: 104 LDEAYLDVSDSSHFGGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGL 163

Query: 182 TILRLEDLQARIWPMAAKKINGIGPKANAKLTSLGITTIGEIAACSEQWLIEQFGRSYGA 241
            ++  + ++  +  +   K++G+G     KL  LGI    ++   ++  L+ +FG S+G 
Sbjct: 164 FVITPDQVEDFVSQLRVSKLHGVGKVTADKLARLGIEDCLQLREWNKLALVREFG-SFGE 222

Query: 242 WLHRVSHGLDDRPVVTHSEPVSMSRETTFEQDLHAVRHRQELGTAFTRLCEQVALDLQR- 300
            L  ++ G+DDR V   S   S+S E T++ DL       +L +   +L E +     R 
Sbjct: 223 RLWSLARGIDDRVVQNDSRRQSISVENTYDVDL------PDLSSCLAKLPELMETLAGRM 276

Query: 301 ----KGYLARRIGIKLRFNDFQTVTRDVTLPEPVADAKALRHAATQCLKRVDLVKSIRLL 356
                 Y A +  +K++F+DF   T +        D ++ +   TQ   R    K +RLL
Sbjct: 277 ARIDSSYRAGKPFVKVKFHDFTQTTLEQA--GAGRDLESYQQLLTQAFNRGG--KPVRLL 332

Query: 357 GV 358
           G+
Sbjct: 333 GI 334