Pairwise Alignments

Query, 381 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

Subject, 351 a.a., DNA polymerase IV (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  173 bits (438), Expect = 8e-48
 Identities = 108/327 (33%), Positives = 166/327 (50%), Gaps = 25/327 (7%)

Query: 5   RRIAHIDMDAFFASCELSQYPELRGQAMVVAGRRSDAPRVNADGTREFARLRDYAGRGVL 64
           R+I H+DMD FFA+ E+   P LR   + + G R                      RGV+
Sbjct: 2   RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRER--------------------RGVI 41

Query: 65  TTATYEARAFGVHSGMPTMQAARLAPDAILLPVNFDLYRTYSRLFKDAIRSVSPTIEDVG 124
           +TA Y AR FGV S MPT  A +L P   LLP  FD Y+  SR  +D     +  IE + 
Sbjct: 42  STANYPARQFGVRSAMPTAMALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPLS 101

Query: 125 IDEVYADLS---LLNDESEQIARKLKSAVFEATNLTCSVGIAPNKLLAKLCSDIQKPDGI 181
           +DE + D++        +  IAR+++  +F    LT S G+AP K LAK+ SD+ KP+G 
Sbjct: 102 LDEAWLDVTDSPHCYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQ 161

Query: 182 TILRLEDLQARIWPMAAKKINGIGPKANAKLTSLGITTIGEIAACSEQWLIEQFGRSYGA 241
            ++   D+   +  +   KI G+G  + AKL ++G+ T G+I  C    L+++FG+ +G 
Sbjct: 162 YVITPADVPDFLKTLPLAKIPGVGKVSAAKLENMGLRTCGDIQQCDLAMLLKRFGK-FGR 220

Query: 242 WLHRVSHGLDDRPVVTHSEPVSMSRETTFEQDLHAVRHRQELGTAFTRLCEQVALDLQRK 301
            L   S G+D+R V +     S+  E T  +D+H     + +        E+  L + + 
Sbjct: 221 VLWERSQGIDERDVNSERLRKSVGVERTLAEDIHEWSDCEAIIEHLYPELER-RLAIVKP 279

Query: 302 GYLARRIGIKLRFNDFQTVTRDVTLPE 328
             L  R G+KL+FNDFQ  T++   P+
Sbjct: 280 DLLIARQGVKLKFNDFQQTTQEHVWPQ 306