Pairwise Alignments

Query, 246 a.a., type III secretion protein from Burkholderia phytofirmans PsJN

Subject, 345 a.a., type III secretion system LEE export apparatus switch protein EscU from Escherichia coli ECRC99

 Score =  109 bits (272), Expect = 8e-29
 Identities = 76/249 (30%), Positives = 124/249 (49%), Gaps = 10/249 (4%)

Query: 1   MSDKTEAPTPNRLRRARKDGDIAKSTHVSVAVSGLFWLLFLLMDAPHVYQVCVHVVEVAT 60
           MS+KTE PTP +LR  +K GD+ KS  V  AV  L    F  +     +   V +V   T
Sbjct: 1   MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVN--T 58

Query: 61  QIDQ-GQPFAVRYLQITRAFGAAMPILLATLGVGALAV----VVPEVAQAGGVFAVKRAL 115
            ID   +PF     +I    GA + I L  +   +L V    V   V+Q G +FAV++  
Sbjct: 59  TIDSLNRPFLYAIREI---LGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIK 115

Query: 116 PDFKRLNPVTGLKNLFGLKTLIDTGIVLMQFCILVFVLWHAFATWCAQLLPAFALAFGGQ 175
           P  ++++    LKN+F +K++ +    + +  I+V + +    ++  +      L     
Sbjct: 116 PSAQKISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQA 175

Query: 176 LSVTAQSLAQLQGLMAASQLAPAAIDFWLQRLQWRRRLRMDKNEIKREHRDEDGDPHVKG 235
           L V A  +  L   +    L  +  DFW Q+ +  ++++M K+E+KRE +D DG+P +KG
Sbjct: 176 LVVVAFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKG 235

Query: 236 RRRALHREL 244
            RR LH E+
Sbjct: 236 ERRRLHSEI 244