Pairwise Alignments

Query, 246 a.a., type III secretion protein from Burkholderia phytofirmans PsJN

Subject, 243 a.a., flagellar biosynthesis protein FlhB from Escherichia coli ECOR27

 Score = 82.4 bits (202), Expect = 8e-21
 Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 25/248 (10%)

Query: 1   MSDKTEAPTPNRLRRARKDGDIAKSTHVSVAVSGLFWLLFL--LMDAPHVYQVCVHVVEV 58
           M++KTE PT  +L+ A K G I KS  ++++V  L   L+L  + D  H+  +  ++++ 
Sbjct: 1   MANKTEKPTQKKLQDASKKGQILKSRDLTISVIMLVGTLYLGYVFDVHHIMSILEYILDH 60

Query: 59  ATQIDQGQPFAVRYLQITRAFGAA-----MPILLATLGVGALAVVVPEVAQAGGVFAVKR 113
             + D    F        +A G       +P LL  +       ++    Q+    A + 
Sbjct: 61  NAKPDIWDYF--------KAMGVGWLKTNIPFLLVCM----FTTILVSWFQSKMQLATEA 108

Query: 114 ALPDFKRLNPVTGLKNLFGLKTL---IDTGIVLMQFCILVFVLWHAFATWCAQLLPAFAL 170
               F  LNPV GLK +FGLKT+   +   + ++ F + + V W    +   + L    +
Sbjct: 109 VKFKFDSLNPVNGLKRIFGLKTVKEFVKAILYIVFFALAIKVFWSNHKSLLFKTLDGDII 168

Query: 171 AFGGQLSVTAQSLAQLQGLMAASQLAPAAIDFWLQRLQWRRRLRMDKNEIKREHRDEDGD 230
           +    LS   + L  L      S +     DF  +   + + ++MDK E+KRE+++++G+
Sbjct: 169 SL---LSDWGEMLFLLILYCLGSMIIVLIFDFIAEYFLFMKDMKMDKQEVKREYKEQEGN 225

Query: 231 PHVKGRRR 238
           P +K +RR
Sbjct: 226 PEIKSKRR 233