Pairwise Alignments

Query, 246 a.a., type III secretion protein from Burkholderia phytofirmans PsJN

Subject, 382 a.a., flagellin export apparatus, substrate specificity protein from Escherichia coli BL21

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 75/259 (28%), Positives = 118/259 (45%), Gaps = 28/259 (10%)

Query: 3   DKTEAPTPNRLRRARKDGDIAKSTHVSVAVSGLFWLLFLLMDAPHVYQVCVHVVE-VATQ 61
           DKTEAPTP+RL +AR++G I +S  ++        LL LL+    ++   V +   ++  
Sbjct: 7   DKTEAPTPHRLEKAREEGQIPRSRELTS-------LLILLVGVSVIWFGGVSLARRLSGM 59

Query: 62  IDQGQPFAVRYL--------QITRAFGAAMPILLATLGVGALAVVVPEVAQAGGVFAVKR 113
           +  G  F    +        QI      AM  LL  +    L  ++  V   G VF+ K 
Sbjct: 60  LSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKS 119

Query: 114 ALPDFKRLNPVTGLKNLFGLKTLIDTGIVLMQFCILV-----FVLWHAFATWCAQLLPAF 168
             P F +LNP+ G+K +F  +T  +    +++  ILV     F LWH +      +  + 
Sbjct: 120 LQPKFSKLNPLPGIKRMFSAQTGAELLKAILK-TILVGSVTGFFLWHHWPQMMRLMAESP 178

Query: 169 ALAFGGQLSVTAQSLAQLQGLMAASQLAP-AAIDFWLQRLQWRRRLRMDKNEIKREHRDE 227
             A G      A  L  L  L+    + P    D + Q     ++LRM + +I+ E +  
Sbjct: 179 ITAMGN-----AMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQS 233

Query: 228 DGDPHVKGRRRALHRELSR 246
           +GDPHVKGR R + R  +R
Sbjct: 234 EGDPHVKGRIRQMQRAAAR 252