Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Burkholderia phytofirmans PsJN

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score =  102 bits (255), Expect = 3e-27
 Identities = 69/159 (43%), Positives = 89/159 (55%), Gaps = 2/159 (1%)

Query: 9   EHVPRLRRYARALINNRDLADDLVQDTLERALGRTGMFQPGTDLRAWLFTIMHNVFANQA 68
           E + RLRR+A  L      ADDLVQ T+ERAL R    +    LRAWLFTI++  F +  
Sbjct: 11  ELLARLRRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRAWLFTILYRQFLDGK 70

Query: 69  RKASARAVHVAVDDESVSESEFAVPSEQTRSLEMRDLDYALQRLPMEQREVVLLVGLEEM 128
           R+    A  ++    +  + E    + +T  L   DL  A  RL  EQR ++LLV +E +
Sbjct: 71  RRERLHARWLSWFGRNEHDDEPVGDNLETIVLAQADLQ-AFARLTAEQRALLLLVSIEGL 129

Query: 129 SYADVALALNIPLGTVMSRLSRGRERLRALMAGT-QPGA 166
           SY + A AL IP+GTVMSRLSR R  LR L  G  QP A
Sbjct: 130 SYKEAAQALGIPIGTVMSRLSRARNALRELTEGNPQPPA 168