Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Burkholderia phytofirmans PsJN

Subject, 168 a.a., ECF RNA polymerase sigma factor EcfG from Pseudomonas sp. RS175

 Score = 98.6 bits (244), Expect = 5e-26
 Identities = 66/171 (38%), Positives = 97/171 (56%), Gaps = 5/171 (2%)

Query: 2   DVRDELMEHVPRLRRYARALINNRDLADDLVQDTLERALGRTGMFQPGTDLRAWLFTIMH 61
           ++ ++L   +PRLRR+A +L  N   ADDLVQ  LERAL +    +   DLRAWLF I++
Sbjct: 3   ELDEQLRVLIPRLRRFAVSLTRNPSNADDLVQMCLERALAKWNDKRAEGDLRAWLFAILY 62

Query: 62  NVFANQARKASARAVHVAVDDESVSESEFAVPSEQTRSLEMRDLDYALQRLPMEQREVVL 121
             F +  R++   A  +    E  +  + A PS + RS+  +    A  +L  EQR ++L
Sbjct: 63  RQFVDAHRRSRRYARML----EFFTGRDDAQPSAE-RSVIAQSSLQAFDQLTTEQRALLL 117

Query: 122 LVGLEEMSYADVALALNIPLGTVMSRLSRGRERLRALMAGTQPGAKLQVVR 172
            V +E +SY  VA  L +P GTVMSRLSR R+ LR L  G      L++++
Sbjct: 118 WVSVEGLSYQQVADILGVPTGTVMSRLSRARQALRQLSDGEITRPPLRILK 168