Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Burkholderia phytofirmans PsJN

Subject, 196 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 85.1 bits (209), Expect = 6e-22
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 6   ELMEHVPRLRRYARALINNRDLADDLVQDTLERALGRTGMFQPGTDLRAWLFTIMHNVFA 65
           E M H+  +  +A  L  + D A DLVQDT  +A      F+ GT+ +AWLF I+ N F 
Sbjct: 21  EFMPHIDSMYNFAFRLTFDEDDAKDLVQDTYLKAYRFINSFEQGTNAKAWLFRILKNSFI 80

Query: 66  NQARKASARAVHVAVDDESVSESEFAVPSEQTRSLEM--------RDLDYALQRLPMEQR 117
           N+ RK S +   V   +     +  +V    T  L +         ++  AL  L ++ R
Sbjct: 81  NEYRKKSKQPSKVDYQEVETYYNSDSVDYNITSDLRVDAVKDMLGDEISNALNSLAVDFR 140

Query: 118 EVVLLVGLEEMSYADVALALNIPLGTVMSRLSRGRERLR 156
            V++L  LE  +Y ++A  L+IP+GTV SRL R R  L+
Sbjct: 141 TVIILCDLEGFTYEEMAKILDIPIGTVRSRLHRARNLLK 179