Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Burkholderia phytofirmans PsJN

Subject, 189 a.a., RNA polymerase ECF-type sigma factor sigU from Caulobacter crescentus NA1000 Δfur

 Score = 94.4 bits (233), Expect = 1e-24
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 4/150 (2%)

Query: 6   ELMEHVPRLRRYARALINNRDLADDLVQDTLERALGRTGMFQPGTDLRAWLFTIMHNVFA 65
           +L+  +P LR +AR+L  N  +ADDL Q+ + +A    G F  GT+++AW F I+ N F 
Sbjct: 12  DLIALIPHLRAFARSLCGNAAMADDLAQEAVAKAWASRGSFTMGTNMKAWTFMILRNQFY 71

Query: 66  NQARKASARAVHVAVDDESVSESEFAVPSEQTRSLEMRDLDYALQRLPMEQREVVLLVGL 125
           +  R+ S R+V +   D+ ++E      +    ++ + DL  A+  LP  QRE ++L+G 
Sbjct: 72  SDKRR-SWRSVAL---DQEMAERTLVANTNFDSAIALDDLRQAMLMLPENQREALILIGA 127

Query: 126 EEMSYADVALALNIPLGTVMSRLSRGRERL 155
              SY + A  + + +GTV SR+SR R  L
Sbjct: 128 GGFSYEEAARMIGVAIGTVKSRVSRARAEL 157