Pairwise Alignments

Query, 538 a.a., peptide ABC transporter substrate-binding protein from Burkholderia phytofirmans PsJN

Subject, 537 a.a., putative transport periplasmic protein (VIMSS) from Escherichia coli BW25113

 Score =  369 bits (947), Expect = e-106
 Identities = 198/531 (37%), Positives = 289/531 (54%), Gaps = 9/531 (1%)

Query: 13  ALVLTFAPSAFAVTVPPGVTLAASQEMTRQVPGETESLDPAHIESWTGNTIGLDLFEGLT 72
           AL+++    ++A  VP G  LA  QE+ R +  E  SLDPA         +  DLFEGL 
Sbjct: 11  ALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLV 70

Query: 73  RMDASGAIVPGVAESWSRSGPNTWVFKLRHDARWSNGQPVTASDFVYSWQRVLDPKTGSK 132
             +  G IVPGVA  W  +    W F LR +A+W++G PVTA DFVYSWQR++DPKT S 
Sbjct: 71  NQNEKGEIVPGVATQWKSNDNRIWTFTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSP 130

Query: 133 YTVLVEF--VKNAKAILAGKAPLSSLGVRAVDPYTLEVTTEVPATFFPQLTAMATMTPVN 190
           +        + NA+AI+ GKA    LGV AVD +TL++  + P  +F  LTA     PV 
Sbjct: 131 FAWFAALAGINNAQAIIDGKATPDQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPVQ 190

Query: 191 RAVVTKFDGDWTRPGNFVGNGPYALTDWQPSNRLVATKSPTYWNNGKVVITKVTYLPIEN 250
           +A V     +WT+PGN +GNG Y L +   + +LV   +  YW+N K V+ KVT+LPI  
Sbjct: 191 KANVES-GKEWTKPGNLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLPINQ 249

Query: 251 DETAMRMYQAGQFDYTYSIPSGVYSQVSKQFGPELKTGLQIATYYYSLNNDDPAFKDKRV 310
           +  A + Y AG  D T S P  +Y ++ K    ++ T  Q+ TYYY+ N       D+RV
Sbjct: 250 ESAATKRYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRV 309

Query: 311 RQALAMVLDRDLLTKRLTADGEVPMYGLIAKGTEGSGVFTPEWANWPMAKRVDY---ARN 367
           R AL+M +DR L+T+++   GE P +      T G   FTPE + +    + +    A+ 
Sbjct: 310 RLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAG---FTPEPSPFEQMSQEELNAQAKT 366

Query: 368 LLKTAGYSDAKPLTFTLTYNTNDLHKKVALFATSEWRTKLGVTAKLENVEYKVLLKQRHD 427
           LL  AGY   KPL  TL YNT++ H+K+A+   S W+  LGV  KL+N E+K  +  R+ 
Sbjct: 367 LLSAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNT 426

Query: 428 GKVQASRDGWFVDYNDANSFFDLIRCNSVQNDQHYCNPQVDKLIDEGNQQLDDAKRTALF 487
           G     R  W  DYN+ ++F  L+      N   + NP  DK++ + + +     R A +
Sbjct: 427 GNFDVIRASWVGDYNEPSTFLTLLTSTHSGNISRFNNPAYDKVLAQASTENTVKARNADY 486

Query: 488 TQAHDLAMNDYPVVSLFQYSADRLVKSYVGGYKPTNYLDMRATQDMYLTKH 538
             A  + M   P+  ++QY+  RL+K ++ GY   N  D+  ++ MY+ KH
Sbjct: 487 NAAEKILMEQAPIAPIYQYTNGRLIKPWLKGYPINNPEDVAYSRTMYIVKH 537