Pairwise Alignments

Query, 786 a.a., general secretion pathway protein GspD from Burkholderia phytofirmans PsJN

Subject, 515 a.a., Type II secretion system protein GspD from Erwinia amylovora T8

 Score =  199 bits (505), Expect = 4e-55
 Identities = 175/590 (29%), Positives = 273/590 (46%), Gaps = 108/590 (18%)

Query: 122 VVTQVFVLKNESANNLLPVLRPLI-SPNNTVAAYPANNTIVVTDYADNVRRIAQIIQGVD 180
           V+T+V  L+  +A +L P+LR L  +   +V  Y  +N +++T  A  + ++  I+  +D
Sbjct: 1   VITRVLPLQFVTAKDLAPLLRQLNDAAAGSVVHYDPSNVLLMTGRAAVISQLMAIVGSID 60

Query: 181 SAAGQSVSVVQLKNANAIDIATQLNKML-DPGSIGSTDATLKVSVTADPRTNSLLIRASN 239
                +V  V+L+ A+A  +A  LN +  D  + GS     K    AD RTN++LI    
Sbjct: 61  LPEDTTVDTVKLQWASAPQVAEILNFINGDSKTAGSNKPFAKA--VADTRTNAVLITGDE 118

Query: 240 GAR---LAAARTLAKELDTPTTMPGNIHVVPLRNADATKLAKTLRGMFGKGGDSGSSSNS 296
            AR   + AAR L +E D  +    N  V  L++A A  L + L         SG SSN 
Sbjct: 119 LARQQLVDAARNLDEEKDRSS----NSRVFYLKHAKAENLVEVL---------SGVSSNI 165

Query: 297 NDANSFNQNNSGGIGGNNSTGSSGTPPLPSGGLGSSSLASPMGGSGSGGGYGAGGSNNGG 356
            D +                               S  ASP+  S               
Sbjct: 166 QDKSE------------------------------SKSASPVAMS--------------- 180

Query: 357 FGNDKEKSDDNQQGGMIQADSATNSLIITAAEPVYRNLRAVIDQLDARRAQVYLEALIVE 416
                       +  +++AD+ TNSLII A   V  +L  +I++LD  RAQV +EA+IVE
Sbjct: 181 ------------KDIVVKADTYTNSLIINAPPDVMGDLEEIINRLDISRAQVQVEAIIVE 228

Query: 417 LNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAAAVAAG--STGGLAGALGNGT 474
           +       LG+QW   N     GT     S   + NL  + +A     T GLA    +G 
Sbjct: 229 VQDADGLALGVQWFNKNGG---GTQFPA-SDAPVSNLIGSTIAEALSKTNGLAAGFYHGN 284

Query: 475 LQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQT 534
                   W        GL   LQ  SQ    N+L+TP+++TLDN EA+  VG +VPI T
Sbjct: 285 --------WA-------GLFTALQTNSQN---NILATPSIVTLDNMEAEFTVGQDVPILT 326

Query: 535 GSYSNLTSATATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTNNAATN 594
           G+ +  T       +N+ DR  VG+ L VKPQI  G  + +++  E S++      ++ +
Sbjct: 327 GTQTTNTDGV----YNSVDRKSVGIKLKVKPQINKGDSVLMEIEQEVSSVA---EQSSVD 379

Query: 595 PAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTR 654
           P G  F  R +++ VL ++G+ +V+GGL+   +    S VP+LG IP IG+LFR     +
Sbjct: 380 PLGATFNTRLVKNAVLVESGKTVVVGGLLDTTHSNVESSVPVLGQIPLIGRLFRYTSDKK 439

Query: 655 NKTNLMVFLRPVIISDRGTAQAVTSNRYDYIQGVQGAYKQDNNLMKDNDD 704
           +K NLM+F+RP II  +      + ++ +  +   G  + D  + +  D+
Sbjct: 440 SKRNLMLFIRPTIIRQQDKFDLTSGSKLEKFREKLGNGEGDKRVAQAIDE 489