Pairwise Alignments
Query, 786 a.a., general secretion pathway protein GspD from Burkholderia phytofirmans PsJN
Subject, 686 a.a., Type II secretion system protein D from Escherichia coli HS(pFamp)R (ATCC 700891)
Score = 219 bits (559), Expect = 3e-61
Identities = 187/594 (31%), Positives = 289/594 (48%), Gaps = 70/594 (11%)
Query: 152 AAYPANNTI--VVTDYADNVRRIAQIIQGVDSAAGQSV--SVVQLKNANAIDIATQLNKM 207
A P N + VV A V + + +G D+ AG + VV ++N + ++A L +M
Sbjct: 106 AVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQM 165
Query: 208 LDPGSIGSTDATLKVSVTADPRTNSLLI-RASNGARLAAARTLAKELDTPTTMPGNIHVV 266
+D G+ V DP +L RAS RL T V+
Sbjct: 166 IDSAGSGNV-------VNYDPSNVIMLTGRASVVERLTEVIQSVDHAGNRTE-----EVI 213
Query: 267 PLRNADATKLAKTLRGMFGKGGDSGSSSNSNDANSFNQNNSGGIGGNNSTGSSGTPPLPS 326
PL NA A+++A+ L + G++ ++ + + + NS + G+ +T +
Sbjct: 214 PLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLI-- 271
Query: 327 GGLGSSSLASPMGGSGSGGGYGAGGSN-----------NGGFGNDKEKSDDNQQGGM--- 372
L S M SG+ + S +G KE+++ G
Sbjct: 272 -----RRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVGSGREIV 326
Query: 373 -IQADSATNSLIITAAEPVYRNLRAVIDQLDARRAQVYLEALIVELNSNTSGNLGIQWQV 431
I A +N+LI+TA + + ++L++VI+QLD RRAQV++EALIVE+ ++ N G+QW
Sbjct: 327 SIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWAS 386
Query: 432 ANNSIFAGTNLQTGSSNSIVNLTAAAVAAGSTGGLAGALGNG-------------TLQQG 478
+ + N G+ I L AA A G NG TL Q
Sbjct: 387 KDAGLMQFAN---GTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTNGDLSTLAQL 443
Query: 479 LNIGWIHNIFGVQ--GLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGS 536
L+ G+ GV AL+QA+ + +NVLSTP++ TLDN+EA +VG +VP+ TGS
Sbjct: 444 LS-GFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGS 502
Query: 537 YSNLTSATATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTNNAATNPA 596
+ ++ FNT +R VG+ L V PQI +G +++ + E S + T+
Sbjct: 503 ---TVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--- 556
Query: 597 GPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNK 656
F +R +++TVLA++GE+IVLGGLM D S +KVPLLGDIP IG LF+S + K
Sbjct: 557 ---FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEK 613
Query: 657 TNLMVFLRPVIISDRGTAQAVTSNRYDYIQGVQGAYKQDN--NLMKDNDDPVVP 708
NLMVF+RP I+ D A V+ +Y+Y++ Q Y+ + +LM PV+P
Sbjct: 614 RNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQ-IYRDEQGLSLMPHTAQPVLP 666
Score = 131 bits (330), Expect = 1e-34
Identities = 91/287 (31%), Positives = 152/287 (52%), Gaps = 7/287 (2%)
Query: 4 RRVATALLVAGLITAQT--AQAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNL 61
+R+ +L A L ++ +A T NF + D+ + +GA KTII+ P V+G++++
Sbjct: 22 KRLLPLVLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVSI 81
Query: 62 VSENAVPEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYVGNTPVARGD 120
+ + E Q + + L QG+A+V ++ VLKVV + AK++ +P + GD
Sbjct: 82 RTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGD 141
Query: 121 QVVTQVFVLKNESANNLLPVLRPLI--SPNNTVAAYPANNTIVVTDYADNVRRIAQIIQG 178
++VT+V ++N S L P+LR +I + + V Y +N I++T A V R+ ++IQ
Sbjct: 142 EMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQS 201
Query: 179 VDSAAGQSVSVVQLKNANAIDIATQLNKMLDPGSIGSTDATLKVSVTADPRTNSLLIRAS 238
VD A ++ V+ L NA+A +IA L + L S + ATLK + AD RTNS+++
Sbjct: 202 VDHAGNRTEEVIPLDNASASEIARVL-ESLTKNSGENQPATLKSQIVADERTNSVIVSGD 260
Query: 239 NGARLAAARTLAKELDTPTTMPGNIHVVPLRNADATKLAKTLRGMFG 285
R R L + LD+ GN V L+ + A L L+ + G
Sbjct: 261 PATR-DKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSG 306
Score = 26.2 bits (56), Expect = 0.006
Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 36/182 (19%)
Query: 124 TQVFVLKNESANNLLPVLRPLISPNN-----------------TVAAYPANNTIVVTDYA 166
+QVF LK A +L+ VL+ + ++AA +N ++VT
Sbjct: 284 SQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVGSGREIVSIAASKHSNALIVTAPQ 343
Query: 167 DNVRRIAQIIQGVDSAAGQ---SVSVVQLKNANAIDIATQLNKMLDPGSIGSTDATLKVS 223
D ++ + +I+ +D Q +V++ + I+ Q S DA L
Sbjct: 344 DIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQW---------ASKDAGLMQF 394
Query: 224 VTADPRTNSLLIRASNGARLAAARTLAKELDTPTTMPGNIHVVPLRNADATKLAKTLRGM 283
L A + A+ T+ E T P N D + LA+ L G
Sbjct: 395 ANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDT-------NGDLSTLAQLLSGF 447
Query: 284 FG 285
G
Sbjct: 448 SG 449