Pairwise Alignments

Query, 786 a.a., general secretion pathway protein GspD from Burkholderia phytofirmans PsJN

Subject, 650 a.a., Putative type II secretion system protein D from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  274 bits (701), Expect = 1e-77
 Identities = 208/697 (29%), Positives = 332/697 (47%), Gaps = 94/697 (13%)

Query: 3   LRRVATALLVAGLI--TAQTAQAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLN 60
           L ++   LL A L+         Q   NF NADI Q  + +G   GKTI++DP V+G ++
Sbjct: 4   LNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTIS 63

Query: 61  LVSENAVPEDQALKTLQSALRMQGFALVQ-DHGVLKVVPEADAKLQGVPTYVGNTPVARG 119
           + S +   + +  +   S L + G++++  D+G L+VV  A+ K         + P   G
Sbjct: 64  VRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLRVVRSANVKTSPGMIADSSRP-GVG 122

Query: 120 DQVVTQVFVLKNESANNLLPVLRPLISPNN--TVAAYPANNTIVVTDYADNVRRIAQIIQ 177
           D++VT++  L+N  A +L P+LR ++   +   V  Y  +N +++T  A  + ++ ++I+
Sbjct: 123 DELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEVIK 182

Query: 178 GVDSAAGQSVSVVQLKNANAIDIATQLNKML-DPGSIGSTDATLKVSVTADPRTNSLLIR 236
            VD    +   ++ L+ A+A D+A  LN+++ +        A L   + AD RTNSL+I 
Sbjct: 183 RVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSARIVADKRTNSLIIS 242

Query: 237 ASNGARLAAARTLAKELDTPTTMPGNIHVVPLRNADATKLAKTLRGMFGKGGDSGSSSNS 296
               AR     +L K LD   +  GN  V  L+ A AT L + L G+  K  D   ++  
Sbjct: 243 GPEKAR-QRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNARK 301

Query: 297 NDANSFNQNNSGGIGGNNSTGSSGTPPLPSGGLGSSSLASPMGGSGSGGGYGAGGSNNGG 356
                                     P  SG + + ++                      
Sbjct: 302 --------------------------PSSSGAMDNVAIT--------------------- 314

Query: 357 FGNDKEKSDDNQQGGMIQADSATNSLIITAAEPVYRNLRAVIDQLDARRAQVYLEALIVE 416
                  +D+     +I AD +    + T           VI +LD RRAQV +EA+IVE
Sbjct: 315 -------ADEQTNSLVITADQSVQEKLAT-----------VIARLDIRRAQVLVEAIIVE 356

Query: 417 LNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAAAVAAGSTGGLAG---ALGNG 473
           +      NLG+QW  AN ++  G    T +   I N           GG+     A    
Sbjct: 357 VQDGNGLNLGVQW--ANKNV--GAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMF 412

Query: 474 TLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQ 533
           +   G+  G+ +  +GV     LL AL+     ++L+TP+++TLDN+ A   VG +VP+ 
Sbjct: 413 SAYNGMAAGFFNGDWGV-----LLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVL 467

Query: 534 TGSYSNLTSATATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTNNAAT 593
           +GS     + +  + FNT +R  VG  L V PQ+ +G  + L++  E S++ + +N+   
Sbjct: 468 SGS----QTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNST-- 521

Query: 594 NPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKT 653
              GP F  R+IQ+ VL   GE +VLGGL+ D  +   SKVPLLGDIP +GQLFR     
Sbjct: 522 --LGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTE 579

Query: 654 RNKTNLMVFLRPVIISDRGTAQAVTSNRYD-YIQGVQ 689
           R K NLMVF+RP II D    ++++  +Y  Y+Q  Q
Sbjct: 580 RAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYLQEQQ 616