Pairwise Alignments
Query, 790 a.a., hypothetical protein from Burkholderia phytofirmans PsJN
Subject, 2380 a.a., Photosystem I assembly protein Ycf3 from Methylophilus sp. DMC18
Score = 426 bits (1095), Expect = e-123
Identities = 262/757 (34%), Positives = 378/757 (49%), Gaps = 60/757 (7%)
Query: 12 PLTPEQQLEQDIALVLQTALDHHHKGEFEDAHALYRAILDANPKHADVLYNLGVLLGQTA 71
P+T E L + V AL H G+ + A LY+ IL P+ A +NLG++
Sbjct: 1092 PMTAE--LGAALEEVFTLALQHQQAGDLQTATQLYQEILAVAPQSAPAWFNLGLIAWAQG 1149
Query: 72 RTAEALPLFEQCLGLHPHNGQYWAAYISALIDAGETAAAWLALEMGQKQGLKGPAVDGLI 131
EA+ F Q P +Y Y+ A+ E AV L
Sbjct: 1150 HQQEAVACFAQAHAAQPAEWEYLQHYLVAMHATASADILAATFEQAMALPQHAEAVHQLA 1209
Query: 132 VRMANPGKVIHTLPVAAQKPQAEPAAATETPPAAESTRTTIASGRRVSQQETNRYTALYN 191
+ PG ++ Q QA A P A++ A E +Y +
Sbjct: 1210 EALKMPGFTRQSV----QHAQASSQDAAMQPDASQQQALLTAF-------EQQQYGQMEQ 1258
Query: 192 KGNVVEAVKLARSLTQRFPADGNSWRWLGIALHR-LGRYDEALAPLRKAAELFPEELESR 250
ALH LG+Y P+ L
Sbjct: 1259 ------------------------------ALHTYLGQY--------------PQWLAGW 1274
Query: 251 TVLADTLRLKGLPAETEQECRKILAINPDYAEAQRIFGMSLVHQGRVAEGLAAARRAIEL 310
+LAD L L+ A ++ L +N + +G+ L +G + A ++AI L
Sbjct: 1275 KMLADVLMLQKKDASAA--AKQALTLNAQDPQEHCYYGIVLKAKGDLPGAATAFQQAIAL 1332
Query: 311 APNNSTAYSTLGVLLLDLGFVSEAEKEFRAALEKDPKDHIAANNFLFTLSHNPEIDHGTL 370
+ + AY+ LG +L DLG V A + F+ AL P +N LF ++H ID+ L
Sbjct: 1333 KSDYAAAYNNLGTVLKDLGQVETAIEHFKCALALQPNYADCFSNLLFCMTHAEHIDNAAL 1392
Query: 371 FAEHTNFARQHEDPVRAQWPRHVNKRSPDRKLKIGLVSGDLFRHAVASYLLPIMEHLAKD 430
H +A +E P++A W H N R R L IG VS D H+VA ++LP++ LAK+
Sbjct: 1393 MQAHQAYADLYEAPLKAAWLPHQNTRDVHRPLNIGWVSADFRAHSVAHFMLPLLNELAKE 1452
Query: 431 PNLSLHVYNNHIAEDDYTQLLRNCADEWHQITGMPDAQLANKIRDERIDILFDLSGHTGR 490
+L L Y N D+ T ++ W++++ D LA +IRD+ IDIL DLSGHT
Sbjct: 1453 TSLRLVAYANQPLVDNVTTQMQGYFSTWYEVSSWSDQALAEQIRDDGIDILIDLSGHTSG 1512
Query: 491 NRLLTFARKPAPIQVTWMGYPGTTGLSAMDYYLADKYGVPFGPAENQFSEKIVHLPSSAT 550
NRLLTFARKPAP+QV+W+GY TTGLS+MDYYLAD Y +P G ++QF+EK+V LP +AT
Sbjct: 1513 NRLLTFARKPAPVQVSWLGYLNTTGLSSMDYYLADPYLLPAGQFDDQFTEKLVQLPVNAT 1572
Query: 551 FLPEQSAPPVNILPAMHNGYVTFGSFNRLNKLRRDVIALWAELLRAQPTAKMLLGAIATD 610
F+P + AP VN LPA++NGYVTF FNR+ K+ + + WA L++A P +++++G +
Sbjct: 1573 FIPYEQAPEVNALPALNNGYVTFACFNRVLKITQATVQQWAALMQALPDSRLVIGGVGEG 1632
Query: 611 EDEQLLIDWFAGEGIERERLMFRRRSSIPVYLQQHFHVDICLDTFPYTGSTTVLNSLWMG 670
E Q L WFA GI R+ + R+ + YL + VDICLDTFP G TT ++LWMG
Sbjct: 1633 ESTQHLQTWFAEAGIAANRIRYYARTDMASYLGYYHEVDICLDTFPSNGVTTTAHALWMG 1692
Query: 671 VPTLTIAGDTLASRAGTTWMSHVGLDDFVVANKEEFVARGVALASDLPALADIRTGLRER 730
VPTL +AGD LASR M H+GL F+ ++ + + + + L +D LA R +RE
Sbjct: 1693 VPTLCVAGDRLASRGAMALMQHLGLMQFIASDHDSLIKQTLDLCADFTKLAACRAHMREH 1752
Query: 731 CAASAAFRPEVVAAGVSRALRIMWQRWCAGEPAAAFE 767
+ S +P + A + + L MWQRWCA + A+ +
Sbjct: 1753 FSNSLLAKPGLQAEALRQMLFQMWQRWCAQQAPASIQ 1789
Score = 296 bits (759), Expect = 7e-84
Identities = 227/775 (29%), Positives = 364/775 (46%), Gaps = 80/775 (10%)
Query: 37 GEFEDAHALYRAILDANPKHADVLYNLGVLLGQTARTAEALPLFEQCLGLHPHNGQYWAA 96
G+ ++A L R L N A VL++L LL ++ ++ EA+ + Q L + P N
Sbjct: 138 GQQKEAEKLLRTALQLNKHDALVLFDLAALLHESGKSLEAVQYYRQALEIEPDNAVLAYN 197
Query: 97 YISALIDAGETAAAWLALE-------------------MGQKQGLKGPAVDGLIVRMANP 137
L G A + + + QK K L R+ NP
Sbjct: 198 MAQVLFVLGNLDEALVHFQRAIDLNQTYFDALHQYGHCLRQKNRFKEAEQVWLQARVLNP 257
Query: 138 --GKVIHTLPVAAQKPQAEPAAATETPPAAESTRTTIASGRRVSQQETNRYTA-LYNKGN 194
++++ L A+ + P E+ I + +E N +T+ L N+
Sbjct: 258 ESWQLLNDL--------AQLYKQLQQPLEYEACAKAIMQVKAPEIEELNNFTSTLINQQL 309
Query: 195 VVEAVKLARSLTQRFPADGNSWRWLGIALHRLGRYDEALAPLRKAAELFPEELESRTVLA 254
+ EA + + D ++ + + L+ Y ++L KA +L P+ + +
Sbjct: 310 LTEAERYCKQAMSLGIEDPFTYCNMALLLYYKQEYAQSLEYYEKALQLKPDCAAFWSNYS 369
Query: 255 DTLRLKGLPAETEQECRKILAINPDYAEAQRIFGMSLVHQGRVAEGLAAARRAIELAPNN 314
+LRL G Q K +A++P+Y ++ G + + QG V + + I AP+
Sbjct: 370 VSLRLVGEVERARQALEKAIALDPEYLDSYINLGSAYLEQGDVKLAVETYVKLIARAPHL 429
Query: 315 STAYSTLGVLLLDLGFVSEAEKEFRAALEKDPKDHIAANNFLFTLSHNPEIDHGTLFAEH 374
AY N L+T S E+ EH
Sbjct: 430 DKAY----------------------------------RNLLYTNSFANELSP----KEH 451
Query: 375 TNFARQHEDPVRAQWPRHVN--KRSPDRKLKIGLVSGDLFRHAVASYLLPIMEHLAKDPN 432
+AR + A+ N + D++L+IGLVS DL H V +L ++H+
Sbjct: 452 LKYARACGEQFMAKAAPFKNWLVNAQDQRLRIGLVSADLRSHPVGYFLEHWLKHIDAG-K 510
Query: 433 LSLHVYNNHIAEDDYTQLLRNCADEWHQITGMPDAQLANKIRDERIDILFDLSGHTGRNR 492
++ Y+ ED+Y+Q+L+ +W + GM DA+ A+ IR++ I IL DLSG+T +R
Sbjct: 511 TEIYAYSADGREDNYSQVLKKHCTQWRSLAGMNDARAASLIREDGIHILLDLSGYTADSR 570
Query: 493 LLTFARKPAPIQVTWMGYPGTTGLSAMDYYLADKYGVPFGPAENQFSEKIVHLP-SSATF 551
+ FA +PAP+Q +W+GY TTGL MD +AD VP G +E QF+E +V LP + F
Sbjct: 571 VSLFAWRPAPVQASWLGYWDTTGLPTMDAVIADPVSVPAG-SEGQFTESVVKLPHTRLCF 629
Query: 552 LPEQSAPPVNILPAMHNGYVTFGSFNRLNKLRRDVIALWAELLRAQPTAKMLLGAIATDE 611
S VN LPA+ NGYVTFG F + +K+ +V+A+WA++ A P AK+ A +
Sbjct: 630 SAPDSNEQVNALPALQNGYVTFGCFQKYSKVSDEVLAVWAQVFLALPEAKLYWQCKAF-Q 688
Query: 612 DEQLLIDWFA---GEGIERERLMFRRRSSIPVYLQQHFHVDICLDTFPYTGSTTVLNSLW 668
D+Q+ + A GI+ E+ + R ++ Y + + VD+ LD+FP+ G TT +LW
Sbjct: 689 DDQIQAEALARLQQAGIQPEQCVLMRPTARDAYFKNYHAVDMILDSFPFNGGTTTCEALW 748
Query: 669 MGVPTLTIAGDTLASRAGTTWMSHVGLDDFVVANKEEFVARGVALASDLPALADIRTGLR 728
MGVPTLT+ G+T+ SR G + M+ GL ++V +K+ FV + + A+DLPALA++R GLR
Sbjct: 749 MGVPTLTMPGETMISRQGASMMTSAGLPEWVAEDKKAFVQKAIQFAADLPALANLRAGLR 808
Query: 729 ERCAASAAFRPEVVAAGVSRALRIMWQRWCAG-EPAAAFEVSIEDVTGAASEAPV 782
+ S E A + + L +W G A + I+D A E PV
Sbjct: 809 AQVMRSPLMDGERFARDMEQLLWNVWSERVTGVADALVTKTRIQD--AYAGEDPV 861
Score = 66.2 bits (160), Expect = 2e-14
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 6/207 (2%)
Query: 161 TPPAAESTRTTIASGRRVSQQETNRYTALYNKGNVVEAVKLARSLTQRFPADGNSWRWLG 220
TP A +S A GR QQ + L+ +G +AR LT FP +G +W+ LG
Sbjct: 7 TPFAQDSQTHGSAPGR---QQLLQQLAQLWQQGATEACFSIARQLTSEFPKEGIAWKILG 63
Query: 221 IALHRLGRYDEALAPLRKAAELFPEELESRTVLADTLRLKGLPAETEQECRKILAINPDY 280
L + G A L +A +L ++ E A+ G + R+ + +NP
Sbjct: 64 GLLQQRGDLQGAGEALAQAVKLLKKDAEVFLNAANVAAQLGDVTLATKHYRQAIRLNPSM 123
Query: 281 AEAQRIFGMSLVHQGRVAEGLAAARRAIELAPNNSTAYSTLGVLLLDLGFVSEAEKEFRA 340
A L G+ E R A++L +++ L LL + G EA + +R
Sbjct: 124 TRAYANLASLLKEAGQQKEAEKLLRTALQLNKHDALVLFDLAALLHESGKSLEAVQYYRQ 183
Query: 341 ALEKDPKDHIAANNF---LFTLSHNPE 364
ALE +P + + A N LF L + E
Sbjct: 184 ALEIEPDNAVLAYNMAQVLFVLGNLDE 210
Score = 65.9 bits (159), Expect = 3e-14
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 12 PLTPEQQLEQDIALVLQTALDHHHKGEFEDAHALYRAILDANPKHADVLYNLGVLLGQTA 71
P+TP L + A +GE A LY A+L A P+HA+ + LG + T
Sbjct: 1824 PVTPSSDL-------MAAAQKLQAEGEITQAAELYLALLKAEPQHAEANFQLGWIETHTR 1876
Query: 72 RTAEALPLFEQCLGLHPHNGQYWAAYISALIDAGETAAAWLALEMGQKQGL 122
ALP EQ + P QYW YI AL+ AA LA++ GQ+ GL
Sbjct: 1877 GVTFALPRLEQAVMQQPEVEQYWVTYIDALMMQDNIRAALLAIQQGQQHGL 1927
Score = 38.5 bits (88), Expect = 4e-06
Identities = 43/155 (27%), Positives = 59/155 (38%)
Query: 193 GNVVEAVKLARSLTQRFPADGNSWRWLGIALHRLGRYDEALAPLRKAAELFPEELESRTV 252
G+V A K R + P+ ++ L L G+ EA LR A +L +
Sbjct: 104 GDVTLATKHYRQAIRLNPSMTRAYANLASLLKEAGQQKEAEKLLRTALQLNKHDALVLFD 163
Query: 253 LADTLRLKGLPAETEQECRKILAINPDYAEAQRIFGMSLVHQGRVAEGLAAARRAIELAP 312
LA L G E Q R+ L I PD A L G + E L +RAI+L
Sbjct: 164 LAALLHESGKSLEAVQYYRQALEIEPDNAVLAYNMAQVLFVLGNLDEALVHFQRAIDLNQ 223
Query: 313 NNSTAYSTLGVLLLDLGFVSEAEKEFRAALEKDPK 347
A G L EAE+ + A +P+
Sbjct: 224 TYFDALHQYGHCLRQKNRFKEAEQVWLQARVLNPE 258