Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 240 a.a., RNA polymerase sigma factor for flagellar operon from Pseudomonas sp. S08-1

 Score =  229 bits (584), Expect = 4e-65
 Identities = 117/236 (49%), Positives = 162/236 (68%), Gaps = 1/236 (0%)

Query: 1   MYN-AQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKED 59
           MYN AQ + SQ +++ +YAPLV+R+   L+A++PASV +DDLIQAGMIGLL+A+ +Y   
Sbjct: 1   MYNKAQAQDSQHQLIERYAPLVKRIAYHLLARLPASVQVDDLIQAGMIGLLEASKKYDGS 60

Query: 60  QGAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAE 119
           +GA FETYA  RIRGAMLDE+R  DW PRS+ R +R V  A+  +E   GR A + E+A 
Sbjct: 61  KGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEARTGRDAKDQEVAA 120

Query: 120 HLQMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSAL 179
            LQ+ L++Y  +L D  GS+L  ++D  +  +     +     H  PL  L D+  ++AL
Sbjct: 121 ELQLSLEDYYGILGDTLGSRLFSFDDLVQDGESGGLHEDVSSSHGGPLHGLEDERFQAAL 180

Query: 180 VEAIDRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRLRE 235
            +AI  LP+RE+L++SLYY+  +NL+EIG V+ VSESRV QLHSQ  ARLR+RL E
Sbjct: 181 ADAIANLPERERLVLSLYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGE 236