Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 240 a.a., RNA polymerase sigma factor FliA from Pectobacterium carotovorum WPP14

 Score =  225 bits (574), Expect = 5e-64
 Identities = 114/233 (48%), Positives = 163/233 (69%)

Query: 1   MYNAQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQ 60
           +Y A+G + +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGLL A  RY   Q
Sbjct: 4   LYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQ 63

Query: 61  GAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEH 120
           G  F TYA QRIRG+MLDELRS DW PRS+RR +REV  A+ + EQ LGR+ +E E+A+ 
Sbjct: 64  GTAFTTYAVQRIRGSMLDELRSRDWAPRSVRRNAREVAQAMQQAEQQLGRTPTEQEVAQT 123

Query: 121 LQMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALV 180
           L + L++Y+ +L D + SQL  Y+++     D         + ++PL  L++ +LR  ++
Sbjct: 124 LNITLEDYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEDANPLHQLMEGNLRHRVM 183

Query: 181 EAIDRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRL 233
           +AI+ LP+REKL+++LYY+  +NL+EIGAV+EV ESRV QLHSQA+ RLR +L
Sbjct: 184 DAIESLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRVKL 236