Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 240 a.a., RNA polymerase sigma factor FliA from Erwinia amylovora T8

 Score =  241 bits (614), Expect = 1e-68
 Identities = 123/233 (52%), Positives = 165/233 (70%)

Query: 1   MYNAQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQ 60
           +Y A G + +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGLL+A  RY   Q
Sbjct: 4   LYTANGVMDKHSLWQRYIPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAMQ 63

Query: 61  GAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEH 120
           G  F TYA QRIRGAMLDELRS DW PRS+RR +REV  A+H+VEQ LGR+A+E E+A  
Sbjct: 64  GTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAGAMHQVEQALGRTATEQEVAAQ 123

Query: 121 LQMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALV 180
           L +PL+EY+ +L D + SQL  ++++     D   L     +  +PL  LL+  LR  ++
Sbjct: 124 LDVPLEEYRQILLDTNNSQLFSFDEYREEHGDSAELVTEGHEQENPLHQLLEGDLRDRVI 183

Query: 181 EAIDRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRL 233
           EAID LP+REK++++LYY+  +NL+EIGAV+EV ESRV QLHSQA+ RLR RL
Sbjct: 184 EAIDGLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236