Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 239 a.a., RNA polymerase sigma factor, FliA/WhiG family from Enterobacter asburiae PDN3

 Score =  236 bits (601), Expect = 4e-67
 Identities = 121/236 (51%), Positives = 170/236 (72%)

Query: 1   MYNAQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQ 60
           +Y A+G + +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGLL+A  RY   Q
Sbjct: 4   LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQ 63

Query: 61  GAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEH 120
           G  F TYA QRIRGAMLDELRS DW+PRS+RR +REV  A+ ++EQ LGR+A+ETE+AE 
Sbjct: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAHAMGQLEQELGRNATETEVAER 123

Query: 121 LQMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALV 180
           L + ++EY+ ML D + SQL  Y+++     D   L        +PL  L++ +LR  ++
Sbjct: 124 LGIAVEEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDEHQQENPLHHLMEGNLRQRVM 183

Query: 181 EAIDRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRLREM 236
           EAI+ LP+RE+L+++LYY+  +NL+EIGAV+EV ESRV QLHSQA+ RLRT+L ++
Sbjct: 184 EAIEALPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239