Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 239 a.a., RNA polymerase sigma factor FliA from Escherichia coli ECRC99

 Score =  239 bits (611), Expect = 3e-68
 Identities = 123/236 (52%), Positives = 169/236 (71%)

Query: 1   MYNAQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQ 60
           +Y A+G + +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGLL+A  RY   Q
Sbjct: 4   LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63

Query: 61  GAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEH 120
           G  F TYA QRIRGAMLDELRS DW+PRS+RR +REV  A+ ++EQ LGR+A+ETE+AE 
Sbjct: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123

Query: 121 LQMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALV 180
           L + + +Y+ ML D + SQL  Y+++     D   L        +PL  LLD +LR  ++
Sbjct: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183

Query: 181 EAIDRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRLREM 236
           EAI+ LP+REKL+++LYY+  +NL+EIGAV+EV ESRV QLHSQA+ RLRT+L ++
Sbjct: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239