Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma70 from Burkholderia phytofirmans PsJN

Subject, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dadantii 3937

 Score =  229 bits (585), Expect = 3e-65
 Identities = 116/233 (49%), Positives = 165/233 (70%)

Query: 1   MYNAQGKISQAEVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAAGRYKEDQ 60
           +Y A+G + +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGLL A  RY   Q
Sbjct: 4   LYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQ 63

Query: 61  GAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVETAVHKVEQNLGRSASETEIAEH 120
           G  F TYA QRIRGAMLDELRS DW PRS+RR +REV  A+ + EQ+LGR+ +E E+A+ 
Sbjct: 64  GTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQT 123

Query: 121 LQMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSALV 180
           L + L+EY+ +L D + SQL  Y+++     D         + ++PL+ L+D +LR  ++
Sbjct: 124 LNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEEANPLNQLMDVNLRQRVM 183

Query: 181 EAIDRLPDREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRL 233
           +AI+ LP+REK++++LYY+  +NL+EIGAV+EV ESRV QLHSQA+ RLR +L
Sbjct: 184 DAIESLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKL 236