Pairwise Alignments

Query, 389 a.a., porin from Burkholderia phytofirmans PsJN

Subject, 386 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  303 bits (775), Expect = 7e-87
 Identities = 179/404 (44%), Positives = 230/404 (56%), Gaps = 33/404 (8%)

Query: 1   MKKSLLALAAL----GAFAGVAHAQSSVTLYGIIDEGFNINTNSGGKHLYNLSSGVLQGS 56
           M K + ALA       AFA  A AQ+SVTLYG++DEG N   N G  H+Y L+SG  QGS
Sbjct: 1   MNKQVFALAVSTALSAAFAAPASAQTSVTLYGVLDEGINYTNNVGRGHVYELASGYAQGS 60

Query: 57  RFGLRGTEDLGGGLKAIFVLENGFDVNNGKLGQGGLMFGRQAYVGLS-SQFGTVTLGRQY 115
           R+GL+G E+LGGGLKAIF LENGFDV++G+L QGG MFGRQA+VGLS +QFGT+T GRQY
Sbjct: 61  RWGLKGAEELGGGLKAIFQLENGFDVSSGRLNQGGRMFGRQAFVGLSANQFGTLTFGRQY 120

Query: 116 DSVVDYVGPLEAGDQWGGYIAAHPGDIDNFNNAYRTNNTVKYTSANYGGLTFGGTYSFGG 175
           DSVVDY+    A   W G + +HP D DN +N++R +N+VKYTS +  G  FGG YSF  
Sbjct: 121 DSVVDYLAQTTANGNWAGSLFSHPYDNDNTDNSFRLDNSVKYTSPSLSGFQFGGVYSFSN 180

Query: 176 IAGNVTSNQIWSLGAGYNNGPLVLGVGYLNARTPAAAGGLFNTGSTAAAPAAAVTSPIYA 235
              N  +N+ +S G  Y+ G L++   YL A  P        T + A+  AA +      
Sbjct: 181 DT-NFANNRAYSFGGQYSYGGLLVAAAYLQADNPGNGANGAITANDASFIAARM------ 233

Query: 236 GFTSANTYQVIGAGGAYTFGAATIGATYSNIRF------GNLGASYASP--FKGQSATFN 287
                   +V G G  YTFG AT G  Y+N  +      G LG +   P      S  + 
Sbjct: 234 --------RVFGGGITYTFGPATAGFVYTNSNYLDPTGNGYLGVTPLVPPGVLLNSLKYQ 285

Query: 288 NAELNFKYQLTPALLVGAAYDYTRGA--EINGNSRAQYHQGAVGVDYFLSKRTDVYVTGV 345
           N E+N KYQ++P L VGA Y YT       +G  + + H   +  DY LSKRTDVY+ G 
Sbjct: 286 NFEVNGKYQISPMLFVGAQYVYTMETYDASSGGVKPKIHSFGLMADYNLSKRTDVYIQGE 345

Query: 346 YQHALGDTVTAGGAVVDATAGINGLSGSSNQNQFTARIGIRHKF 389
           YQ   GD+     +++D    +   S SS   Q   R  IRHKF
Sbjct: 346 YQQVTGDSTY---SILDDAFNVGTQSPSSTSKQVVVRAAIRHKF 386