Pairwise Alignments

Query, 389 a.a., porin from Burkholderia phytofirmans PsJN

Subject, 385 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  305 bits (780), Expect = 2e-87
 Identities = 183/404 (45%), Positives = 238/404 (58%), Gaps = 34/404 (8%)

Query: 1   MKKSLLALAALGAFAGVA----HAQSSVTLYGIIDEGFNINTNSGGKHLYNLSSGVLQGS 56
           MKK+ +A AA  A A +A     AQSSVTLYG++DEG +   N+G   ++ ++SG  QGS
Sbjct: 1   MKKNRIAAAAFTALASLAASPAFAQSSVTLYGVLDEGIDYTNNAGHGAVWEMASGYAQGS 60

Query: 57  RFGLRGTEDLGGGLKAIFVLENGFDVNNGKLGQGGLMFGRQAYVGLS-SQFGTVTLGRQY 115
           R+G++G+EDLGGGLKA+F LENGFDV++G+LGQGG MFGRQAYVGLS  +FGTVTLGRQY
Sbjct: 61  RWGMKGSEDLGGGLKAVFQLENGFDVSSGRLGQGGRMFGRQAYVGLSDGRFGTVTLGRQY 120

Query: 116 DSVVDYVGPLEAGDQWGGYIAAHPGDIDNFNNAYRTNNTVKYTSANYGGLTFGGTYSFGG 175
           DSVVDY+    A   W GY+ AHP D DN +N++R  N+VKY S    G  FGG Y+F  
Sbjct: 121 DSVVDYLAQTTANGNWAGYLFAHPYDNDNTDNSFRLGNSVKYASPEMAGFQFGGAYAFSN 180

Query: 176 IAGNVTSNQIWSLGAGYNNGPLVLGVGYLNARTPAAAGGLFNTGSTAAAPAAAVTSPIYA 235
              N  +N+ +S G  Y NG L++   Y+ A  P    G+ +TG+  A  A+ +      
Sbjct: 181 DT-NFANNRAYSFGGQYANGGLLIAAAYMQADNP----GVGSTGAITANDASFI------ 229

Query: 236 GFTSANTYQVIGAGGAYTFGAATIGATYSNIRFGN-LGASYAS-PFKGQSATFN-----N 288
               A   +V G G  YTFG+AT G  Y+N  + N  G  Y   P      T N     N
Sbjct: 230 ----AGRMRVYGGGINYTFGSATAGFAYTNSNYKNPTGNGYIGIPLAAPGVTLNTLKYQN 285

Query: 289 AELNFKYQLTPALLVGAAYDYT--RGAEINGNSRAQYHQGAVGVDYFLSKRTDVYVTGVY 346
            ELN KYQ TPA  VGA Y YT       +G+ + + H   +  DY LS+R DVYV G Y
Sbjct: 286 FELNGKYQFTPAFFVGAQYVYTMENYDASSGSVKPKIHSVGLMADYDLSRRIDVYVQGEY 345

Query: 347 QHALGDTVTAGGAVVDATAGINGLSG-SSNQNQFTARIGIRHKF 389
           Q   GD+     +++D  A I G+   SS   Q   R+ +RHKF
Sbjct: 346 QKVAGDST---HSILD-DAFIPGVQAPSSTGTQVAVRVALRHKF 385