Pairwise Alignments

Query, 332 a.a., D-galactose ABC transporter, substrate-binding component (from data) from Burkholderia phytofirmans PsJN

Subject, 334 a.a., L-arabinose-binding periplasmic protein from Pseudomonas sp. DMC3

 Score =  302 bits (774), Expect = 7e-87
 Identities = 169/334 (50%), Positives = 219/334 (65%), Gaps = 7/334 (2%)

Query: 1   MKRRIFL-TLAAAATGVL-FNAPVAQ-AADPVKIGFLVKQPEEPWFQDEWKFAEIAAKEK 57
           MKRR  + TL + A  V  F+   A  AAD VKIGFLVKQ EEPWFQ EW FAE AAK+K
Sbjct: 1   MKRRFGIRTLCSTALAVTAFSLSSALLAADAVKIGFLVKQAEEPWFQTEWAFAEKAAKDK 60

Query: 58  GFTLVKIGAPSGEKVMSAIDNLSAQKAQGFVICTPDVKLGPGIVAKAKADGLKMMTVDDR 117
           GF L+KI  P GEK +SAID+L+A  A+GFVIC PDV LGP I+AKAK + LK++ VDDR
Sbjct: 61  GFELIKIAVPDGEKTLSAIDSLAANGAKGFVICPPDVSLGPAIMAKAKINDLKVIAVDDR 120

Query: 118 LVDGAGKPIASVPHMGISAYNIGKQVGDGLAAEIKKRGWDMKDVGAIDVTYEQLPTAHDR 177
            VD  GK +  VP++G++A+ +G++ G  +AAE KKR WD KD  A+  TY +L T   R
Sbjct: 121 FVDANGKFMEDVPYLGMAAFEVGQKQGAAMAAEAKKRNWDWKDTYAVVNTYNELDTGKKR 180

Query: 178 TSGATDALIAAGFPKANIVMAPQAKTDTENAFNAANIALTKNPQ-FKHWVAYALNDEGVL 236
           T G+ DAL  AG P+ +I+ A     D   + +A N AL K P   K+ +   +ND  VL
Sbjct: 181 TDGSVDALKKAGMPEDHILFAALKTLDVPGSMDATNSALVKLPSAAKNLIIGGMNDNTVL 240

Query: 237 GAVRAAEGRGFKADNMIGIGIGGSDSALNEFKKPSPTGFYGTVIISPKRHGEETSTLMYD 296
           G VRA E  GF A N+IGIGI G+D A+ E KKP+ +GF+G+++ SP   G +T+ +MY+
Sbjct: 241 GGVRATEAAGFAASNVIGIGINGTD-AIGELKKPN-SGFFGSMLPSPHIEGYKTAEMMYE 298

Query: 297 WITQGKAPPPLTLTTGM-LATRDNVADVRQKMGL 329
           WIT GK PP  T    + L TRDN     +K+GL
Sbjct: 299 WITAGKEPPKYTAMDDVTLITRDNFKQELEKIGL 332