Pairwise Alignments

Query, 246 a.a., 16S rRNA methyltransferase from Burkholderia phytofirmans PsJN

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E from Pseudomonas sp. DMC3

 Score =  167 bits (422), Expect = 2e-46
 Identities = 91/245 (37%), Positives = 141/245 (57%), Gaps = 11/245 (4%)

Query: 1   MPRFFVGTPLQPEDVLPLPDDVVRHVL-VLRLQPGDSIVLFNGEGGEYSAELVEVERRSA 59
           + RFF+  PL   +   LP+    ++  VLR+  GD++ LF+G G E+   LV+V ++  
Sbjct: 3   LSRFFIDAPLSTGEH-ELPEAQAHYISRVLRMAEGDAVQLFDGSGHEFRGSLVDVGKKRV 61

Query: 60  MVKIREFRDIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASSFVPLTTTRSVVRLSGD 119
           +V+I E    ++E+P ++ L QG++ G++MDW I+KA ELG +   P+ + R  VRL  +
Sbjct: 62  VVQIDEQFAGQIESPLQIHLGQGLSRGERMDWAIQKATELGVTQITPIFSERCEVRLKDE 121

Query: 120 RAQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGSMPRTPEEGDLRILLSPRASI 179
           RA +R  HW+ +  ++CEQCGR+R+P + P   +A WL        E +L+++L P A  
Sbjct: 122 RADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWL-----KQTEAELKLVLHPVA-- 174

Query: 180 SFSALPSEPPKGRVTVLVGPEGGFSATEEAAAAAHGFTAVGLGPRVMRTETAGIAVLSAL 239
               L S      +  L+GPEGG +  E   A  +GF A  LGPRV+RTETA +  L+  
Sbjct: 175 --EPLVSHAKPATLAFLIGPEGGLTDAEVEQAKGNGFHAARLGPRVLRTETAPVVALAVA 232

Query: 240 AAGWG 244
              WG
Sbjct: 233 QQLWG 237