Pairwise Alignments

Query, 894 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN

Subject, 1040 a.a., Excinuclease ABC subunit A from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  489 bits (1260), Expect = e-142
 Identities = 304/788 (38%), Positives = 414/788 (52%), Gaps = 113/788 (14%)

Query: 149  FSPNTVQGACPTCHGLGRVYEVTEKSMVPDDSLTIRERAIAAWPP--AWHGQNLRDILVT 206
            FS N+  GACPTC GLG         +V   SL++   AI  W     ++   +  +   
Sbjct: 320  FSFNSPMGACPTCDGLGHTEFFDPARVVAFPSLSLASGAIKGWDRRNGYYFAMIESLAAH 379

Query: 207  LGYDVDKPWRDLPKKDRDWILFTDEQPTVPVYAGLTPKETRAALRRKDEPSYQGTFTGAR 266
              ++ + PW  LP   +  +L+   +  V     L   E       K  P     F G  
Sbjct: 380  YRFNAEAPWESLPDAVQQVLLYGSGEDEVKFSYALESGERAGKKVSKKHP-----FEGIV 434

Query: 267  RYVLHTFANTQSALMKKRVSRFMIGSVCPTCHGKRLKKEALSVKFAGLDIGEFAQLPLAR 326
            R     +  T SA +++ ++R+     CP C G RL++EA  V F G   GE  Q P+ +
Sbjct: 435  RNFERRYRETDSAAVREELARYRAVQACPECAGSRLRREARHV-FVGE--GEQKQ-PIYK 490

Query: 327  LAEMLAPIARGEWPEPDVGHSGKDPGKGSVLSKNAMRDAVDKRVAAGGSAHKAAPDVRRT 386
            ++ +    A   + + ++                                H A  D+   
Sbjct: 491  ISHVTLGEALAYFQKLEL--------------------------------HGAKGDI--- 515

Query: 387  PNLSEEKRVAAQRIAAELLERLTTLVDLGLGYLALERSTPTLSSGELQRLRLATQLSSQL 446
                      A R+  E+ +RL  L D+GL YL+L+RS  TLS GE QR+RLA+Q+ S L
Sbjct: 516  ----------AARVINEIRQRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGL 565

Query: 447  FGVVYVLDEPSAGLHPADGEALFSALQSLKAAGNSLFVVEHDLQMMRRADWLVDVGPAAG 506
             GV+YVLDEPS GLH  D + L + LQ L+  GN++ VVEHD  M+R AD ++D+GP AG
Sbjct: 566  TGVMYVLDEPSIGLHQRDNDRLIATLQHLRDLGNTVLVVEHDEDMIRTADHVIDMGPGAG 625

Query: 507  EAGGHVVYSGPPAGLAKVEASHTRRHLFA------------------------------- 535
              GG V+  G    +     S T ++L                                 
Sbjct: 626  VHGGRVMAQGTCEQVMATPDSLTGQYLGGTRQIAVPARRTPWLPVVKKGEAPKAAPTKPR 685

Query: 536  -PPAPVA--RATREPAGW--------LRLAGITRNNLHGLDAAFPLGCLTAVTGVSGSGK 584
             PP+P A  RA RE A          +R+     +NL G   AFP+G LT VTGVSGSGK
Sbjct: 686  FPPSPAAERRAAREAAHQATLGELQEIRVVNARGHNLKGASVAFPVGLLTCVTGVSGSGK 745

Query: 585  SSLVSQALPELVASHLGRVFENPDDDEQDPLLATASAPTSGRIAEGMDALRRLVRVDQKP 644
            S+LV+  L   VA  L R  + P   +                 EG++   +++ VDQ P
Sbjct: 746  STLVNDTLYAAVARTLYRSHDEPAAHDA---------------IEGIEHFDKVINVDQSP 790

Query: 645  IGRTPRSNLATYTGLFDHVRKLFADTPLARKRRYGAGRFSFNVAQGRCPTCEGEGFVSVE 704
            IGRTPRSN ATYTGLF  +R+L A+ P AR+R YG GRFSFNVA GRC  C+G+G V VE
Sbjct: 791  IGRTPRSNPATYTGLFTGIRELMAEMPTARERGYGPGRFSFNVAGGRCEACQGDGVVKVE 850

Query: 705  LLFLPSVYAPCSTCHGTRYNTQTLEVTWRDKNIAEVLGLTVDAACDFFADEASVMRALKV 764
            + FLP VY PC  CHG RYN +TL+V ++ +NIA++L +TV+ +  FF+   ++ R L+ 
Sbjct: 851  MHFLPDVYVPCEVCHGQRYNRETLDVQYKGRNIAQILDMTVEQSHAFFSAVPTLHRKLQT 910

Query: 765  LRDIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYILDEPTTGLHPADVDRLM 824
            L D+GL Y++LGQ AT LSGGEAQR+KLA EL +   G TLYILDEPTTGLH AD++ L+
Sbjct: 911  LLDVGLSYIQLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIELLL 970

Query: 825  VQLQGLVDAGNTVVVVEHDMRVASQSDWVVDVGPGAGDAGGKIVASGTPAEILRVKESRT 884
              L  L DAGNT+VV+EH++ V   +DWV+D+GP  G  GG +VA GTP  I    +S T
Sbjct: 971  KVLHQLRDAGNTIVVIEHNLDVIKTADWVIDMGPEGGSGGGTVVAQGTPETIAAHPDSHT 1030

Query: 885  AEYLRQHL 892
              YLR+ L
Sbjct: 1031 GRYLRRLL 1038



 Score =  137 bits (345), Expect = 3e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%)

Query: 20  TGFVRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPY 79
           + F+ VRGAR HNLKNID+ IP+ ALVV TG+SGSGKSSLAF TLYAE QRRY ES++ Y
Sbjct: 41  SAFLSVRGARTHNLKNIDLDIPKHALVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 100

Query: 80  ARRLIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLVRMLYSRTG 135
           AR+ ++ +  P+VD IEGL PA+A++Q+  + + RS+VG+VT +   +R+L++R G
Sbjct: 101 ARQFLQLMDKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARAG 156



 Score = 60.5 bits (145), Expect = 5e-13
 Identities = 54/158 (34%), Positives = 69/158 (43%), Gaps = 15/158 (9%)

Query: 23  VRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYFES-VAPYAR 81
           +RV  AR HNLK   V  P   L   TGVSGSGKS+L   TLYA   R  + S   P A 
Sbjct: 712 IRVVNARGHNLKGASVAFPVGLLTCVTGVSGSGKSTLVNDTLYAAVARTLYRSHDEPAAH 771

Query: 82  RLIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLV-RMLYSRTGDYPPK 140
             IE  G+   D +  +  +   +  R  P+  +  G  T +  L+  M  +R   Y P 
Sbjct: 772 DAIE--GIEHFDKVINVDQSPIGRTPRSNPA--TYTGLFTGIRELMAEMPTARERGYGPG 827

Query: 141 QPMLFAEDFSPNTVQGACPTCHGLGRVYEVTEKSMVPD 178
           +       FS N   G C  C G G V    E   +PD
Sbjct: 828 R-------FSFNVAGGRCEACQGDGVV--KVEMHFLPD 856



 Score = 53.9 bits (128), Expect = 5e-11
 Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 537 PAPVARATREPAGWLRLAGITRNNLHGLDAAFPLGCLTAVTGVSGSGKSSLVSQALPELV 596
           P  +  A R  + +L + G   +NL  +D   P   L  +TG+SGSGKSSL   A   L 
Sbjct: 30  PRYLGAALRHASAFLSVRGARTHNLKNIDLDIPKHALVVITGLSGSGKSSL---AFDTLY 86

Query: 597 ASHLGRVFENPDDDEQDPLLATASAPTSGRIAEGMDALRRLVRVDQKPIGRTPRSNLATY 656
           A    R  E+     +   L     P    I    + L   + ++QK     PRS + T 
Sbjct: 87  AEGQRRYVESLSAYARQ-FLQLMDKPDVDLI----EGLSPAIAIEQKATSHNPRSTVGTV 141

Query: 657 TGLFDHVRKLFA 668
           T + D++R LFA
Sbjct: 142 TEIHDYLRLLFA 153



 Score = 30.8 bits (68), Expect = 5e-04
 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 25/90 (27%)

Query: 622 PTSGRIAEGMDALRRL-------VRVDQKPIGRTPRSNLATYTGLFDHVRKLFADTPLAR 674
           P   R+AE  +A  RL       V +D    G  PR          +H        PL  
Sbjct: 260 PLRQRLAESFEAALRLADGRAIAVEMDAAEAGAAPR----------EHGFSARFACPLCH 309

Query: 675 KRRYGAGR-----FSFNVAQGRCPTCEGEG 699
              Y  G      FSFN   G CPTC+G G
Sbjct: 310 ---YTVGELEPRLFSFNSPMGACPTCDGLG 336