Pairwise Alignments

Query, 894 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN

Subject, 940 a.a., excinuclease ABC subunit UvrA from Escherichia coli ECOR27

 Score =  478 bits (1230), Expect = e-139
 Identities = 280/749 (37%), Positives = 396/749 (52%), Gaps = 81/749 (10%)

Query: 149 FSPNTVQGACPTCHGLGRVYEVTEKSMVPDDSLTIRERAIAAWPPA--WHGQNLRDILVT 206
           FS N   GACPTC GLG         ++ +  L++   AI  W     ++ Q L+ +   
Sbjct: 268 FSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADH 327

Query: 207 LGYDVDKPWRDLPKKDRDWILFTDEQPTVPVYAGLTPKETRAALRRKDEPSYQGTFTGAR 266
             +DV+ PW  L       +L+   +  +         E +    R D    +  F G  
Sbjct: 328 YKFDVEAPWGSLSANVHKVVLYGSGKENI---------EFKYMNDRGDTSIRRHPFEGVL 378

Query: 267 RYVLHTFANTQSALMKKRVSRFMIGSVCPTCHGKRLKKEALSVKFAGLDIGEFAQLPLAR 326
             +   +  T+S+ +++ +++F+    C +C G RL++EA  V             PL  
Sbjct: 379 HNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHVYVENT--------PLPA 430

Query: 327 LAEMLAPIARGEWPEPDVGHSGKDPGKGSVLSKNAMRDAVDKRVAAGGSAHKAAPDVRRT 386
           +++M             +GH                                 A +    
Sbjct: 431 ISDM------------SIGH---------------------------------AMEFFNN 445

Query: 387 PNLSEEKRVAAQRIAAELLERLTTLVDLGLGYLALERSTPTLSSGELQRLRLATQLSSQL 446
             L+ ++   A++I  E+ +RL  LV++GL YL L RS  TLS GE QR+RLA+Q+ + L
Sbjct: 446 LKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGL 505

Query: 447 FGVVYVLDEPSAGLHPADGEALFSALQSLKAAGNSLFVVEHDLQMMRRADWLVDVGPAAG 506
            GV+YVLDEPS GLH  D E L   L  L+  GN++ VVEHD   +R AD ++D+GP AG
Sbjct: 506 VGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAG 565

Query: 507 EAGGHVVYSGPPAGLAKVEASHTRRHLFAP---PAPVARATREPAGWLRLAGITRNNLHG 563
             GG VV  GP   +  V  S T +++        P  R    P   L+L G   NNL  
Sbjct: 566 VHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKD 625

Query: 564 LDAAFPLGCLTAVTGVSGSGKSSLVSQALPELVASHLGRVFENPDDDEQDPLLATASAPT 623
           +    P+G  T +TGVSGSGKS+L++  L  +    L                AT + P 
Sbjct: 626 VTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNG--------------ATIAEPA 671

Query: 624 SGRIAEGMDALRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFADTPLARKRRYGAGRF 683
             R  +G++   +++ +DQ PIGRTPRSN ATYTG+F  VR+LFA  P +R R Y  GRF
Sbjct: 672 PYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRF 731

Query: 684 SFNVAQGRCPTCEGEGFVSVELLFLPSVYAPCSTCHGTRYNTQTLEVTWRDKNIAEVLGL 743
           SFNV  GRC  C+G+G + VE+ FLP +Y PC  C G RYN +TLE+ ++ K I EVL +
Sbjct: 732 SFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDM 791

Query: 744 TVDAACDFFADEASVMRALKVLRDIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGD 803
           T++ A +FF    ++ R L+ L D+GL Y+RLGQ AT LSGGEAQR+KLA EL +   G 
Sbjct: 792 TIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQ 851

Query: 804 TLYILDEPTTGLHPADVDRLMVQLQGLVDAGNTVVVVEHDMRVASQSDWVVDVGPGAGDA 863
           TLYILDEPTTGLH AD+ +L+  L  L D GNT+VV+EH++ V   +DW+VD+GP  G  
Sbjct: 852 TLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSG 911

Query: 864 GGKIVASGTPAEILRVKESRTAEYLRQHL 892
           GG+I+ SGTP  +   + S TA +L+  L
Sbjct: 912 GGEILVSGTPETVAECEASHTARFLKPML 940



 Score =  132 bits (331), Expect = 1e-34
 Identities = 62/114 (54%), Positives = 89/114 (78%)

Query: 23  VRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARR 82
           + VRGAR HNLKNI++ IPRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 83  LIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLVRMLYSRTGD 136
            +  +  P+VD IEGL PA++++Q+  + + RS+VG++T +   +R+L++R G+
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGE 117



 Score = 56.2 bits (134), Expect = 9e-12
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 20/161 (12%)

Query: 23  VRVRGAREHNLKNIDVQIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARR 82
           +++ GAR +NLK++ + +P       TGVSGSGKS+L   TL+  AQR+           
Sbjct: 613 LKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQL------NGAT 666

Query: 83  LIEQVGVPEVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSLVRMLY-----SRTGDY 137
           + E     ++  +E     + + Q     + RS+  + T + + VR L+     SR   Y
Sbjct: 667 IAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGY 726

Query: 138 PPKQPMLFAEDFSPNTVQGACPTCHGLGRVYEVTEKSMVPD 178
            P +       FS N   G C  C G G +    E   +PD
Sbjct: 727 TPGR-------FSFNVRGGRCEACQGDGVI--KVEMHFLPD 758



 Score = 48.5 bits (114), Expect = 2e-09
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 551 LRLAGITRNNLHGLDAAFPLGCLTAVTGVSGSGKSSLVSQALPELVASHLGRVFENPDDD 610
           + + G   +NL  ++   P   L  VTG+SGSGKSSL   A   L A    R  E+    
Sbjct: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSL---AFDTLYAEGQRRYVESLSAY 60

Query: 611 EQDPLLATASAPTSGRIAEGMDALRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFA 668
            +   L+    P    I    + L   + ++QK     PRS + T T + D++R LFA
Sbjct: 61  ARQ-FLSLMEKPDVDHI----EGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFA 113