Pairwise Alignments
Query, 615 a.a., tetratricopeptide repeat protein from Burkholderia phytofirmans PsJN
Subject, 1339 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2
Score = 288 bits (737), Expect = 1e-81
Identities = 212/602 (35%), Positives = 284/602 (47%), Gaps = 24/602 (3%)
Query: 15 GRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNLR--PEDAALQ 72
GR DDA + D P V Q G+ EA E +R A L DA+
Sbjct: 153 GRADDALASHTRAADLLPGDPRPWTNRAVSLRQLGRLDEAVEALRMASALGGGAGDASAL 212
Query: 73 LNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAAGRHEDAADAFEKSLRL 132
L AL A G+++D+ E++ +AL L P P LG A G+ +DAA F+ + +
Sbjct: 213 SALAAALHAAGRMEDSAERYADALRLEPRDPFCLNGLGLCLKALGQLDDAATCFDAATAI 272
Query: 133 QPDDASSHNNFGNALHALGRHTEAIAAFRRTIELRPGHAGALNNMGMSLNALGRAEEAIP 192
QPD A + +N G+ A GR EA A R+ + RP AGA NN+G + +A GR +A
Sbjct: 273 QPDHADALDNLGSVRIAQGRPAEAEALHRQAVHHRPDFAGAWNNLGNARHAAGRTADAWR 332
Query: 193 CFQTALAAEPRFVAAHFNLANTFDATGRHAEAVASFKAALALQPNLPPAIFGMGNALAAL 252
+ A+A P H NL N + R EA S + A+ L P P+ +G+
Sbjct: 333 AWHVAVALAPALAETHTNLGNALRSAERFTEAERSQRRAIRLAPLESPSRNNLGHLRQGR 392
Query: 253 GRHAEALPYLERAVGLDPQFALAWLSLGTAHQALGAHGPAVRALDQALRLRPDLASAHMN 312
+A A A+ LDP + AW +LG A Q LG G A R D+AL LRPDL+ H N
Sbjct: 393 HDYAGAADCYRSALALDPAYGEAWSNLGLARQRLGDSGEAERCYDRALTLRPDLSLCHFN 452
Query: 313 RALAWLAQRDFARGLPEYEWRLQT--MAQPVIQTLPRWHGEPIAERTLLVHAEQGFGDTL 370
+ L L D RG P Y WR + + Q P W GE + R L++ EQG GDT+
Sbjct: 453 KGLLRLEAGDLDRGWPGYAWRFGSGQVGQGRQPRAPAWRGEDLTGRRLMIWGEQGVGDTI 512
Query: 371 QFVRFVPLVAQRAARVVLEVQPQLLPLLAPAAQAWRVTLIA------QGAPRPAADLHCP 424
F P +A RA +LE+ +L+PL A + RV A + P D H P
Sbjct: 513 LFSALCPELAGRAVSTILEIDRRLVPLFARSFPTLRVRAEAMDGQGREAMAIPDYDRHVP 572
Query: 425 LLSLPLALGTTFDTIPQRTPYLSVPAAYGRKWRGSLG--GQAKRKIGIAWSGRIQQNETR 482
+ SLP L P R +L A +WR L G R IGI W ++ +E
Sbjct: 573 MGSLPRVLRRRLADFPARPSWLVPDAGLVERWRERLAVLGPGLR-IGIGWRSQMMTSERS 631
Query: 483 S--MQLAALDPLFALEGIDWIVLQ-PELSAEERMALDTHPRAASIHRFD--KRIGDFADT 537
+ + L A PLFAL GI W++LQ E+ E R A +HR+D R DF
Sbjct: 632 AAYLPLDAWAPLFALPGIHWVMLQYGEVEEEVRQAEKRF--GIRLHRWDDLDRKDDFDGV 689
Query: 538 AAIIERLDAVVSIDTSIAHVAGALRKPLWLMLPFAADWRWFAGETGSPWYPGATLVRQPQ 597
AA+I LD V+S S+ +AGAL P+W DW G PWYP L QP+
Sbjct: 690 AALIAGLDLVISPAMSVGELAGALGTPVWRF--GTRDWTQL-GAGVRPWYPSMRLF-QPR 745
Query: 598 PG 599
PG
Sbjct: 746 PG 747
Score = 203 bits (517), Expect = 3e-56
Identities = 184/581 (31%), Positives = 252/581 (43%), Gaps = 53/581 (9%)
Query: 43 VLRHQQGQHAEAAELVRRAVNLRPEDAALQLNLGNALKALGQIDDAIEQFRNALTLAPSF 102
V H+QG+ A+A L R+AV + P A N G L LG+I AI R A+TL P+F
Sbjct: 794 VALHRQGRFAKAETLHRQAVAMAPTQPAAWTNGGLTLLRLGRIKAAIHWHRLAVTLNPAF 853
Query: 103 PMAHYNLGNAYAAAGRHEDAADAFEKSLRLQPDDASSHNNFGNALHALGRHTEAIAAFRR 162
A NLG A A +AA ++ RL+P A N AL A R EA A R
Sbjct: 854 AEALGNLGVALQADAAAPEAATLHRRTTRLRPMQAEGWGNLAAALLAARRFAEAANACTR 913
Query: 163 TIELRPGHAGALNNMGMSLNALGRAEEAIPCFQTALAAEPRFVAAHFNLANTFDATGRHA 222
L P AG L G + LGR EA + +L P NL GR
Sbjct: 914 AAALAPALAGVLTTAGAAAKGLGRFAEAARQSRRSLRLVPASPKGWSNLGMALAGLGRWD 973
Query: 223 EAVASFKAALALQPNLPPAIFGMGNALAALGRHAEALPYLERAVGLDPQFALAWLSLGTA 282
+A+ + + A+AL P+LP + G+ L G ER +
Sbjct: 974 DALYAHRHAMALAPDLPDVLVNHGHTLLMRG---------ERRL---------------- 1008
Query: 283 HQALGAHGPAVRALDQALRLRPDLASAHMNRALAWLAQRDFARGLPEYEWRLQTMAQPVI 342
A D+ LRL P A A MNRAL LA D G +Y R T V
Sbjct: 1009 ---------AALLADRTLRLAPGRAEARMNRALLRLADGDLDGGWADYAHRFAT-GDAVS 1058
Query: 343 QTL--PRWHGEPIAERTLLVHAEQGFGDTLQFVRFVPLVAQRAARVVLEVQPQLLPLLAP 400
+ L P W GEP+A R +LV EQG GD + F +P + +A V++E P+L L A
Sbjct: 1059 RRLDIPEWQGEPLAGRRILVWGEQGLGDEILFGTALPDLLGQAGTVIVECDPRLARLFAR 1118
Query: 401 AAQAWRVTLIAQGAPRPAADLHCPLLSLPLALGTTFDTIPQRTPYLSVPAAYGRKWRGSL 460
A A V A A AD H PL S+ L +P L+ WR L
Sbjct: 1119 ALPAAEVR--APSADPRGADCHAPLGSVAARLRPDLRRFRATSPLLAADPGLAAGWRERL 1176
Query: 461 GGQAK-RKIGIAW-SGRIQQNETRS-MQLAALDPLFALEGIDWIVLQPE-LSAEERMALD 516
++GI W S R+ + + ++ P+F + GI ++ LQ + AE AL
Sbjct: 1177 STLGPCLRVGICWRSSRMTADRAGAYSRITQWSPVFGIPGITFVSLQYDGHDAEREEAL- 1235
Query: 517 THPRAASIHRF---DKRIGDFADTAAIIERLDAVVSIDTSIAHVAGALRKPLWLMLPFAA 573
H +H + D+R D AA++ LD V+S T++ +A AL P+W + A
Sbjct: 1236 -HRFGTVLHHWPDLDQR-NDLDGVAALMSGLDLVISAPTAVGELAAALGVPVW-RIAGAG 1292
Query: 574 DWRWFAGETGSPWYPGATLVRQPQPGAWGDVVEAVANALRK 614
DW G PW+P +L+ + G + AVA LR+
Sbjct: 1293 DWS-ALGTAVRPWFPTMSLI--GRSGDHDAALAAVAQRLRR 1330
Score = 187 bits (475), Expect = 3e-51
Identities = 127/344 (36%), Positives = 165/344 (47%), Gaps = 36/344 (10%)
Query: 5 FDRAFAAHRDGRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNL 64
F A H+DG LD AE YR L P H DALHLLGVL HQ+ + +A EL+ +AV+L
Sbjct: 7 FAEALRHHQDGALDAAEPLYRRVLQAEPLHADALHLLGVLNHQRNNNLQAVELIAKAVDL 66
Query: 65 RPEDAALQLNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAAGRHEDAAD 124
P A NLG L+ L ++ +A R AL P AH+NLG AA GR +AAD
Sbjct: 67 APGVADYHANLGIVLQRLDRLAEAEAAQRRALERDPGHVGAHFNLGLVLAAQGRLAEAAD 126
Query: 125 AFEKSLRLQPDDASSHNNFGNALHALGRHTEAIAAFRRTIELRP---------------- 168
+ ++ RL PD A +H N G AL LGR +A+A+ R +L P
Sbjct: 127 QYAEAARLSPDLADAHLNLGAALQGLGRADDALASHTRAADLLPGDPRPWTNRAVSLRQL 186
Query: 169 --------------------GHAGALNNMGMSLNALGRAEEAIPCFQTALAAEPRFVAAH 208
G A AL+ + +L+A GR E++ + AL EPR
Sbjct: 187 GRLDEAVEALRMASALGGGAGDASALSALAAALHAAGRMEDSAERYADALRLEPRDPFCL 246
Query: 209 FNLANTFDATGRHAEAVASFKAALALQPNLPPAIFGMGNALAALGRHAEALPYLERAVGL 268
L A G+ +A F AA A+QP+ A+ +G+ A GR AEA +AV
Sbjct: 247 NGLGLCLKALGQLDDAATCFDAATAIQPDHADALDNLGSVRIAQGRPAEAEALHRQAVHH 306
Query: 269 DPQFALAWLSLGTAHQALGAHGPAVRALDQALRLRPDLASAHMN 312
P FA AW +LG A A G A RA A+ L P LA H N
Sbjct: 307 RPDFAGAWNNLGNARHAAGRTADAWRAWHVAVALAPALAETHTN 350
Score = 114 bits (286), Expect = 2e-29
Identities = 91/281 (32%), Positives = 120/281 (42%), Gaps = 36/281 (12%)
Query: 2 QPVFDRAFAAHRDGRLDDAERGYR--ATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVR 59
+P +RA + + GRLD+A R + L G AL L H G+ ++AE
Sbjct: 174 RPWTNRAVSLRQLGRLDEAVEALRMASALGGGAGDASALSALAAALHAAGRMEDSAERYA 233
Query: 60 RAVNLRPEDAALQLNLGNALKALGQIDDAIEQF--------------------------- 92
A+ L P D LG LKALGQ+DDA F
Sbjct: 234 DALRLEPRDPFCLNGLGLCLKALGQLDDAATCFDAATAIQPDHADALDNLGSVRIAQGRP 293
Query: 93 -------RNALTLAPSFPMAHYNLGNAYAAAGRHEDAADAFEKSLRLQPDDASSHNNFGN 145
R A+ P F A NLGNA AAGR DA A+ ++ L P A +H N GN
Sbjct: 294 AEAEALHRQAVHHRPDFAGAWNNLGNARHAAGRTADAWRAWHVAVALAPALAETHTNLGN 353
Query: 146 ALHALGRHTEAIAAFRRTIELRPGHAGALNNMGMSLNALGRAEEAIPCFQTALAAEPRFV 205
AL + R TEA + RR I L P + + NN+G A C+++ALA +P +
Sbjct: 354 ALRSAERFTEAERSQRRAIRLAPLESPSRNNLGHLRQGRHDYAGAADCYRSALALDPAYG 413
Query: 206 AAHFNLANTFDATGRHAEAVASFKAALALQPNLPPAIFGMG 246
A NL G EA + AL L+P+L F G
Sbjct: 414 EAWSNLGLARQRLGDSGEAERCYDRALTLRPDLSLCHFNKG 454
Score = 80.5 bits (197), Expect = 4e-19
Identities = 67/200 (33%), Positives = 81/200 (40%)
Query: 13 RDGRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNLRPEDAALQ 72
R GR+ A +R + NPA +AL LGV EAA L RR LRP A
Sbjct: 832 RLGRIKAAIHWHRLAVTLNPAFAEALGNLGVALQADAAAPEAATLHRRTTRLRPMQAEGW 891
Query: 73 LNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAAGRHEDAADAFEKSLRL 132
NL AL A + +A A LAP+ G A GR +AA +SLRL
Sbjct: 892 GNLAAALLAARRFAEAANACTRAAALAPALAGVLTTAGAAAKGLGRFAEAARQSRRSLRL 951
Query: 133 QPDDASSHNNFGNALHALGRHTEAIAAFRRTIELRPGHAGALNNMGMSLNALGRAEEAIP 192
P +N G AL LGR +A+ A R + L P L N G +L G A
Sbjct: 952 VPASPKGWSNLGMALAGLGRWDDALYAHRHAMALAPDLPDVLVNHGHTLLMRGERRLAAL 1011
Query: 193 CFQTALAAEPRFVAAHFNLA 212
L P A N A
Sbjct: 1012 LADRTLRLAPGRAEARMNRA 1031