Pairwise Alignments
Query, 615 a.a., tetratricopeptide repeat protein from Burkholderia phytofirmans PsJN
Subject, 1183 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2
Score = 288 bits (737), Expect = 9e-82
Identities = 221/631 (35%), Positives = 306/631 (48%), Gaps = 33/631 (5%)
Query: 7 RAFAAHRDGRLDDAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNLRP 66
+A A H+ GR +AERGYR L +P + DA+HLLGVL Q G EA L+ +A+
Sbjct: 10 QAVAHHQAGRAAEAERGYRDVLTKDPRNADAMHLLGVLALQSGHAEEAVTLIGKALAQTR 69
Query: 67 EDAALQLNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAAGRHEDAADAF 126
A NLG+AL A G+ D+A++ NA L P +NLGNA AA GRH++A AF
Sbjct: 70 GVADYWDNLGSALSAAGRPDEAVQAHHNATILDPQGAQRRHNLGNALAALGRHDEAQRAF 129
Query: 127 EKSLRLQPDDASSHNNFGNALHALGRHTEAIAAFRRTIELRPGHAGALNNMGMSLNALGR 186
+L L+PD A + N GN AL R+ A+ A R ++L PG A NN+G +L GR
Sbjct: 130 AAALALKPDYAKAWYNLGNGHAALHRYGGAVTALDRAVQLAPGMVEAHNNLGDALAMAGR 189
Query: 187 AEEAIPCFQTALAAEPRFVAAHFNLANTFDATGRHAEAVASFKAALALQPNLPPAIFGMG 246
+EAI + P A +NL A +++ AL P A+ +G
Sbjct: 190 LDEAIAQHRLVTRHRPDDATAFYNLGAVLQQKSAFESAEIAYRQALKRNPRHSAALNNLG 249
Query: 247 NALAALGRHAEALPYLERAVGLDPQFALAWLSLGTAHQALGAHGPAVRALDQALRLRPDL 306
+ L LGR +A +A+ L P+F A +LG A QA G + A ++AL +PDL
Sbjct: 250 SVLKRLGRPDQAELCHRQALDLYPEFVEARYNLGNALQAQGRYEEAAACFEEALAQQPDL 309
Query: 307 ASAHMNRALAWLAQRDFARGLPEYEWRLQT-MAQPVIQ-TLPRWHGEPIAERTLLVHAEQ 364
A+A N +L L D ARG YE R A P + +PRW GE + + LL+ EQ
Sbjct: 310 ATATYNLSLLALLHGDIARGWAGYERRFAAGEAVPNRRFPIPRWGGEVLRGKRLLIWREQ 369
Query: 365 GFGDTLQFVRFVP-LVAQRAARVVLEVQPQLLPLL-----APAAQAWRVTLIAQGAP--- 415
G GD + F P +VA V +E P+L+PL +A T A G P
Sbjct: 370 GVGDEMMFASCYPDVVAWAGGPVTIECDPRLVPLFRRSFPKATVRAESCTGDAFGEPLRE 429
Query: 416 ---RPAADLHCPLLSLPLALGTTFDTIPQRTPYLSVPAAYGRKWRGSLGGQAK-RKIGIA 471
P DL LP L + + P+L A +WR L G ++GI
Sbjct: 430 TIDPPDCDLQVAAGDLPELLRGSLSAFEPQGPWLVADPALVERWRERLAGLGPGLRVGIG 489
Query: 472 WSGRIQQNETRS--MQLAALDPLFALEGIDWIVLQ-----PEL-SAEERMALDTHPRAAS 523
W ++ + ++ + L PLFA+ G+ ++ LQ EL +AEER + H R A
Sbjct: 490 WRSQLMTVDRKAAYVMLEHWGPLFAVPGLTFVNLQYGECEAELRAAEERFGVTIH-RWAD 548
Query: 524 IHRFDKRIGDFADTAAIIERLDAVVSIDTSIAHVAGALRKPLWLMLPFAADWRWFAGETG 583
++ D DF AA+ LD V+S S +AGAL P+W + DW G
Sbjct: 549 LNLKD----DFDGAAALTANLDLVISPAMSAGELAGALGLPVWRF--GSRDWTQL-GTEA 601
Query: 584 SPWYPGATLVRQPQPG-AWGDVVEAVANALR 613
PW+P L QP+PG A +V A A ALR
Sbjct: 602 RPWFPTMRLF-QPRPGEALDSIVGATAQALR 631
Score = 171 bits (434), Expect = 1e-46
Identities = 161/564 (28%), Positives = 239/564 (42%), Gaps = 59/564 (10%)
Query: 66 PEDAALQLNLGNALKALGQIDDAIEQFRNALTLAP-----SFPMAHYNLGNAYAAAGRHE 120
P D LN L G+ D+A +R A+ P P A + LG GR++
Sbjct: 652 PADFDALLNHAADLHRNGRPDEAEAAYRAAIAADPRREALGHPDALHLLGLLMHQTGRND 711
Query: 121 DAADAFEKSLRLQPDDASSHNNFGNALHALGRHTEAIAAFRRTIELRPGHAGALNNMGMS 180
DA ++LR+ P + N+ G RH ++ AF R + L P + AL ++G+
Sbjct: 712 DALALIGEALRIDPAFPQAWNHLGLVHEMEKRHADSSFAFARALALHPAYPEALTHLGLV 771
Query: 181 LNALGRAEEAIPCFQTALAAEPRFVAAHFNLANTFDATGRHAEAVASFKAALALQPNLPP 240
GR E + + A+A +P + AH NL + + TG+ +EA ++ ALALQP
Sbjct: 772 HQIGGRPAEGMRLHRRAIAIQPDHIPAHANLGHACELTGQTSEATGHYRRALALQPESAE 831
Query: 241 AIFGMGNALAALGRHAEALPYLERAVGLDPQFALAWLSLGTAHQALGAHGPAVRALDQAL 300
A + R EA +L RA+ +DP FALA +LG
Sbjct: 832 ANNNLATMATLANRLDEAKSHLRRALRVDPGFALAAWNLGLM------------------ 873
Query: 301 RLRPDLASAHMNRALAWLAQRDFARGLPEYEWRLQTMAQPVIQTLPRWHGEPIAERTLLV 360
DLA + A ++R AR L R + + +PV W GE + R LLV
Sbjct: 874 ----DLADGRIAEGWAGYSRRFSARQLQ----RARRIDRPV------WTGEALRGRRLLV 919
Query: 361 HAEQGFGDTLQFVRFVPLVAQRAARVVLEVQPQLLPLLAPAAQAWRVTL-IAQGAPR--- 416
+EQG GD + F + V +E +L+ L A + V A A R
Sbjct: 920 WSEQGVGDEILFASCFDALNGLDGPVTVECDRRLVSLFARSFPGVAVRAETADPAGRETI 979
Query: 417 --PAADLHCPLLSLPLALGTTFDTIPQRTPYLSVPAAYGRKWRGSLGGQAKRKIGIAWSG 474
P +L P +LP + P R YL +WR L K+G+AW
Sbjct: 980 DPPDCELQMPAGNLPALVRDRVARYPDRPAYLRPDPGLVVQWRDRLAALPGLKVGLAWRS 1039
Query: 475 RI--QQNETRSMQLAALDPLFALEGIDWIVLQPELSAEERMALDTHPRAASIHRFD--KR 530
+I Q LA L + G+ ++LQ E ++T R +HR+D
Sbjct: 1040 QIVTAQRAAAYTGLADWVALLDMPGVSVVMLQYGDCTAELARVETATR--RLHRWDDLNL 1097
Query: 531 IGDFADTAAIIERLDAVVSIDTSIAHVAGALRKPLWLMLPFAADWRWFAGETGSPWYPGA 590
DF +A+I LD V+S T++ +AGAL P+W + DW G PW+P
Sbjct: 1098 KDDFEGVSALIANLDLVISPATAVGELAGALGTPVWRL--GTRDWTQI-GTGVRPWFPPM 1154
Query: 591 TLVRQPQPGAWGDVVEAVANALRK 614
L+ QPQ G + +A+A R+
Sbjct: 1155 RLI-QPQEG------QGLADAARR 1171
Score = 120 bits (302), Expect = 3e-31
Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 5/230 (2%)
Query: 4 VFDRAFAAHRDGRLDDAERGYRATLDGNP-----AHVDALHLLGVLRHQQGQHAEAAELV 58
+ + A HR+GR D+AE YRA + +P H DALHLLG+L HQ G++ +A L+
Sbjct: 658 LLNHAADLHRNGRPDEAEAAYRAAIAADPRREALGHPDALHLLGLLMHQTGRNDDALALI 717
Query: 59 RRAVNLRPEDAALQLNLGNALKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAAGR 118
A+ + P +LG + + D+ F AL L P++P A +LG + GR
Sbjct: 718 GEALRIDPAFPQAWNHLGLVHEMEKRHADSSFAFARALALHPAYPEALTHLGLVHQIGGR 777
Query: 119 HEDAADAFEKSLRLQPDDASSHNNFGNALHALGRHTEAIAAFRRTIELRPGHAGALNNMG 178
+ +++ +QPD +H N G+A G+ +EA +RR + L+P A A NN+
Sbjct: 778 PAEGMRLHRRAIAIQPDHIPAHANLGHACELTGQTSEATGHYRRALALQPESAEANNNLA 837
Query: 179 MSLNALGRAEEAIPCFQTALAAEPRFVAAHFNLANTFDATGRHAEAVASF 228
R +EA + AL +P F A +NL A GR AE A +
Sbjct: 838 TMATLANRLDEAKSHLRRALRVDPGFALAAWNLGLMDLADGRIAEGWAGY 887
Score = 94.7 bits (234), Expect = 2e-23
Identities = 72/231 (31%), Positives = 103/231 (44%), Gaps = 5/231 (2%)
Query: 32 PAHVDALHLLGVLRHQQGQHAEAAELVRRAVNLRPEDAALQLN-----LGNALKALGQID 86
PA DAL H+ G+ EA R A+ P AL LG + G+ D
Sbjct: 652 PADFDALLNHAADLHRNGRPDEAEAAYRAAIAADPRREALGHPDALHLLGLLMHQTGRND 711
Query: 87 DAIEQFRNALTLAPSFPMAHYNLGNAYAAAGRHEDAADAFEKSLRLQPDDASSHNNFGNA 146
DA+ AL + P+FP A +LG + RH D++ AF ++L L P + + G
Sbjct: 712 DALALIGEALRIDPAFPQAWNHLGLVHEMEKRHADSSFAFARALALHPAYPEALTHLGLV 771
Query: 147 LHALGRHTEAIAAFRRTIELRPGHAGALNNMGMSLNALGRAEEAIPCFQTALAAEPRFVA 206
GR E + RR I ++P H A N+G + G+ EA ++ ALA +P
Sbjct: 772 HQIGGRPAEGMRLHRRAIAIQPDHIPAHANLGHACELTGQTSEATGHYRRALALQPESAE 831
Query: 207 AHFNLANTFDATGRHAEAVASFKAALALQPNLPPAIFGMGNALAALGRHAE 257
A+ NLA R EA + + AL + P A + +G A GR AE
Sbjct: 832 ANNNLATMATLANRLDEAKSHLRRALRVDPGFALAAWNLGLMDLADGRIAE 882
Score = 71.6 bits (174), Expect = 2e-16
Identities = 47/149 (31%), Positives = 71/149 (47%)
Query: 19 DAERGYRATLDGNPAHVDALHLLGVLRHQQGQHAEAAELVRRAVNLRPEDAALQLNLGNA 78
D+ + L +PA+ +AL LG++ G+ AE L RRA+ ++P+ NLG+A
Sbjct: 746 DSSFAFARALALHPAYPEALTHLGLVHQIGGRPAEGMRLHRRAIAIQPDHIPAHANLGHA 805
Query: 79 LKALGQIDDAIEQFRNALTLAPSFPMAHYNLGNAYAAAGRHEDAADAFEKSLRLQPDDAS 138
+ GQ +A +R AL L P A+ NL A R ++A ++LR+ P A
Sbjct: 806 CELTGQTSEATGHYRRALALQPESAEANNNLATMATLANRLDEAKSHLRRALRVDPGFAL 865
Query: 139 SHNNFGNALHALGRHTEAIAAFRRTIELR 167
+ N G A GR E A + R R
Sbjct: 866 AAWNLGLMDLADGRIAEGWAGYSRRFSAR 894