Pairwise Alignments

Query, 896 a.a., virulence protein E from Burkholderia phytofirmans PsJN

Subject, 736 a.a., Pyocin R2_PP, traC domain protein from Pseudomonas putida KT2440

 Score =  344 bits (882), Expect = 1e-98
 Identities = 185/412 (44%), Positives = 254/412 (61%), Gaps = 11/412 (2%)

Query: 488 WERDLARSEKGNLLPTLGNVHLILSNHKAWQGVIAQDDFAGRVMKRKRPPFAQGETGEWS 547
           W+  LAR+E G L+  + NV LIL+N + W GVI  + F+ ++M+ +  P+  G  GEWS
Sbjct: 327 WKDMLARTESGALIAHMQNVELILANDERWSGVIGYNAFSSKIMRLRAAPYG-GVPGEWS 385

Query: 548 DMDDIRCVLWLSQKYGISVRQDIVMNAVLLVADATHFHDVREYLEGVVWDGIERVRSWPT 607
           D+DD+R + WL+Q+ G+ V+   V+ AV +VA    FH V  YL  + WD + R+  W  
Sbjct: 386 DIDDMRVMKWLAQQ-GLRVKASHVVEAVSVVAHDNAFHPVCTYLARLEWDRVPRLERWLH 444

Query: 608 RYMKVADSEYVQLAGMKWLIAAVARVMRPGCKADNVLILEGRQGWFKSTALEVIAGKPWY 667
               V  +EY    G +W+I+AVARVM+PGCKAD VLILEG QG  KS+AL V+ G  W+
Sbjct: 445 EIFGVPRNEYSSKVGKRWMISAVARVMKPGCKADAVLILEGAQGAGKSSALGVLGGD-WF 503

Query: 668 TNSPIRIGDKDTYAVMAGKWIIELAELDSLNKSDSSAAKSFFATETDRFRNFYGKRATDV 727
            ++P  +GDKD +  + GKWI+EL ELDS NK++S+ AK FF+   D +R  YG+R +DV
Sbjct: 504 MDTPFTLGDKDAFQAIRGKWIVELGELDSFNKAESTKAKQFFSASIDTYRESYGRRTSDV 563

Query: 728 HRQGVFAGSVNFDTYLKDESGNRRYWPLRVGGPILIDDLRRDRDQLWAEAVHLYRQGVIW 787
            RQ VFAG+ N D YLKD +GNRRYWP+     + ++ LRR RDQLWAEA+  Y+ G IW
Sbjct: 564 PRQCVFAGTTNQDEYLKDATGNRRYWPVAC-VKVDLEALRRARDQLWAEAMFCYQAGDIW 622

Query: 788 HVTEAEKPLFESEQAERYEGDVYEDRIARDLE---LRGRVTMEEILADILKLDTSKWTPP 844
            VT  E+ LF +EQ ER+  D +E  I + LE       VT  E+L   L LD   W  P
Sbjct: 623 WVTREEEELFTAEQEERFVVDEWEGPILKWLEESQAGETVTGSEVLGQALNLDPGHWGKP 682

Query: 845 EQRRVGKALKSLGWVRKR----ESTGRREWFYVKEEEVPQPATELITEGADD 892
           EQ RVG  +  LGW R+R      +G+R W Y K +   + A E  T+  ++
Sbjct: 683 EQMRVGSIMHRLGWRRRRLAALPKSGKRPWAYQKPDGWGRSALEQSTQPKEE 734



 Score =  154 bits (390), Expect = 1e-41
 Identities = 116/352 (32%), Positives = 164/352 (46%), Gaps = 76/352 (21%)

Query: 34  GAGKKYWYSLHQ-IERSGEVLGYTGAFGRWSGNDNGAQPFQWHGEALTQEDVNATRQRQQ 92
           G  K  WY LH+ +   G+ L + G+FG W   +   Q  +  G  LT ++    R RQ 
Sbjct: 35  GKEKNGWYVLHEHLAEKGQTLIF-GSFGDWRLGET--QKVKTDGRGLTPDEREVMRARQA 91

Query: 93  AAERAEAEKKAQAAKLAANRARDQWHKANDDGVSAYLDRKQITPEGVRF-DADGTLLVPM 151
            A+R  AE  A AA+ AA RA   + +  + G SAYLDRKQ+   GVR+    G +LVPM
Sbjct: 92  DAKRRAAEIAANAARRAAKRAEALFKRMPEKGRSAYLDRKQVVGFGVRYAPKSGAVLVPM 151

Query: 152 FQYTDTIRLVGLQKITPDGAKRFNK-------GMEKKGAAYLLGDIGDDDKVAMIAEGYA 204
               D I  VGLQ I P   +   +       GM K GA +++G   +  +  ++ EGYA
Sbjct: 152 QNAQDAI--VGLQVIFPAVQEDTGRDKSYWPHGMAKDGAFHMIGGHPEPGEPVLVCEGYA 209

Query: 205 TARSIRMATNDAIPLVICFDAGGILSTARRLRERHPDLHVLVCADDDWKIEQRLRDCLLE 264
           T  S+ MAT+ A+   I FDAG +++ A+ +RER P   +++C DDDWK ++        
Sbjct: 210 TGASLHMATSQAV--AIAFDAGNLMAVAKHMRERFPGRSIIICRDDDWKTKR-------- 259

Query: 265 DFGYSGELVPGGDAVRVETRNTWYMLRAEHKQINGGVEFIELTIWNDVMPERRRRFENAG 324
                    P G+                               WN             G
Sbjct: 260 ---------PTGEP------------------------------WN------------PG 268

Query: 325 LKYAYEAVADIGQASVVFPRFADRGDRKLTDFNDLHCTEGLESVRRQIQSAL 376
            + A  A   +G   VV P F+   + K TDFNDLHC EGLE+VRRQ+ + +
Sbjct: 269 EEKANNAAVVVG-GQVVGPIFSAEREVKWTDFNDLHCAEGLEAVRRQVTAVI 319