Pairwise Alignments

Query, 854 a.a., N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) from Burkholderia phytofirmans PsJN

Subject, 836 a.a., PTS N-acetyl-D-glucosamine transporter from Pseudomonas simiae WCS417

 Score =  766 bits (1978), Expect = 0.0
 Identities = 427/859 (49%), Positives = 562/859 (65%), Gaps = 30/859 (3%)

Query: 1   MSHSEGHIVLLAPMTGPVVPLANVPDPVFSGGMFGDGIGVDPLEGRLVAPCDATVTHLAR 60
           MS++   + L AP++GPV+ L NVPD VF+ G  GDGI +DPL   L APCD  + H+AR
Sbjct: 1   MSYNNNELTLSAPLSGPVLTLGNVPDEVFASGAMGDGIAIDPLNDCLYAPCDGVIIHVAR 60

Query: 61  TGHAVTLATAEGAEILLHIGIDTVELNGKGFAPMVAQGAHVRAGDVLIEFDQDQVALNAP 120
           TGHA+T+    GAE+L+H+GIDTVELNG+GFA +V  GA V  G  L++FD D++A    
Sbjct: 61  TGHALTIRAENGAEVLMHVGIDTVELNGEGFALLVKDGARVSKGQALVQFDLDRIARQCK 120

Query: 121 SLVSVIAIANSDAFEIVERVQGGLLKAGETPLLVLRARDGAAAEASRQLSSTNVTEEARQ 180
           SLVS+I + N + FE+   V G  +K GE PLL + AR  AA + +   S  +V+   R 
Sbjct: 121 SLVSLIILTNGERFEL-RAVAGQKVKVGE-PLLQIVARSAAAVQTAVDNSEADVSASVR- 177

Query: 181 QVTLVHAGGLHARPAARAREAARGFDARVEVRYEGRKAAIESVVGLLGLGAGEGATVELL 240
              + H GGLHARPAA  R+ A+ F ++ ++ +  + A+ +S++GL+GLG GEG  V + 
Sbjct: 178 ---ITHRGGLHARPAALIRKTAQDFSSQAQLHFGDKSASCDSLIGLMGLGIGEGDEVRVT 234

Query: 241 GMGPQAAAA----VAAIANELTREAHGEVEEKPARQSSPAPQAVARPAGETLAPNTLAGV 296
             G  A AA    VAA++  +  E H  V   P R  + A                L GV
Sbjct: 235 CRGKDAEAALQALVAALSAVIKEEHHVPVVAPPRRAHTEA--------------GVLQGV 280

Query: 297 CAAPGVAVGKLVRWDDADIDPPEKANGTSAAESRLLDKAIATVDADLDTTVRDASQRGAV 356
           CAAPG+  G L R    ++ P +  N ++  + + LD A+  V +++ +T+  A QR  V
Sbjct: 281 CAAPGLVCGPLFRLTGIEL-PADVGNHSADEQLQHLDTALEQVRSEIRSTLAHARQRKNV 339

Query: 357 GEAGIFSVHRVLLEDPTLLDAARDLISLGKSAGFAWREAIRAQIAILTNIEDALLAERAA 416
            E  IF+ H  LLEDP LL+AA   I  G +A  AWR+AI+AQ A+L  +   L AERA 
Sbjct: 340 EEEDIFAAHLALLEDPNLLEAATRSIEQGSAATHAWRDAIQAQCAVLLALGKPLFAERAN 399

Query: 417 DLRDIEKRVLRALGYTSATARTLPEEAVLAAEEFTPSDLSTLDRSRVTALVMARGGATSH 476
           DLRD+++RVLRAL    A    LP  ++++A E TPSDL  L       + MA GGATSH
Sbjct: 400 DLRDLQQRVLRAL-LGEAWHFELPAGSIVSAHELTPSDLLQLSAQHAVGICMAEGGATSH 458

Query: 477 AAILARQAGIPALVAVGDALHAIPEGTQVVVNATTGRLEFAPTELDVERARLERTRLADV 536
            AILAR  G+P +VA+G  +  +P+G +VV++A  GRLE  PTE     A + + R A  
Sbjct: 459 VAILARGKGLPCVVALGAEVLDVPQGQRVVLDAVNGRLELEPTE--ARHAEVHQIRDAQK 516

Query: 537 --REANRRTSQQAAVTSDGRAIEVAANIATLDDAKTAVENGADSVGLLRTELLFIHRAAA 594
             R+  +  +Q+ A T+DG +IEVAAN+A+  +A+ A ENGAD VGLLRTE LF+ R  A
Sbjct: 517 LRRQQQQAQAQEPARTTDGVSIEVAANVASSAEAQVAFENGADGVGLLRTEFLFVDRRTA 576

Query: 595 PTTDEHRQSYQAIVDALSGRTAIIRTLDVGADKEVDYLTLPPEPNPALGLRGIRLAQVRP 654
           P   E R +YQA++DA+  ++ IIRT+DVG DK++DYL LP E NP LGLRGIR+AQVRP
Sbjct: 577 PDEQEQRHAYQAVLDAMGDKSVIIRTIDVGGDKQLDYLPLPVEANPVLGLRGIRMAQVRP 636

Query: 655 DLLDDQLRGLLAVQPLGAVRILLPMVTDVGELIRIRKRIDEFARELGRTEPIEVGVMIEV 714
           +LLD QLR LL V PL   RILLPMV++V EL++IR+R+DE   EL  T+  E+GVMIEV
Sbjct: 637 ELLDQQLRALLQVSPLERCRILLPMVSEVDELLQIRQRLDELCVELELTQRPELGVMIEV 696

Query: 715 PSAALLADQLAQHADFLSIGTNDLTQYTLAMDRCQADLAAQADGLHPAVLRLIAATVQGA 774
           P+AAL+A+ LA+HADFLSIGTNDL+QYTLAMDR  A LAA+ D LHPA+LRLIA T  GA
Sbjct: 697 PAAALMAEHLAKHADFLSIGTNDLSQYTLAMDRDHAGLAARVDALHPALLRLIAQTCAGA 756

Query: 775 DKHGKWVGVCGALAGDPLAMPLLVGLGVTELSVDPVSVPGIKARVRNLDYQLCRQRAQDA 834
            KHG+WVGVCGALA DPLA P+LVGLGV+ELSV P  +  IK RVR+LD   CRQ +Q  
Sbjct: 757 TKHGRWVGVCGALASDPLATPVLVGLGVSELSVSPPQIAEIKDRVRHLDAAQCRQLSQGL 816

Query: 835 LALESAQAVRAASRETWPL 853
           L L SA+AVR A +  WPL
Sbjct: 817 LDLSSAKAVRQACQHHWPL 835