Pairwise Alignments

Query, 422 a.a., DNA-binding protein from Burkholderia phytofirmans PsJN

Subject, 368 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  354 bits (908), Expect = e-102
 Identities = 205/415 (49%), Positives = 250/415 (60%), Gaps = 53/415 (12%)

Query: 10  ELAAWLRLALAPGLKPGALRLLLGAFGLPEAIFEQAPEALAEIAGAAAASAALAPTGPDF 69
           ELAAWLRL L PG+   + R LL AFGLPEA+F Q   A   + GA AA A   P   D 
Sbjct: 5   ELAAWLRLLLTPGVGLDSARKLLAAFGLPEAVFAQPAPAWQAVVGARAADALQQPP-EDL 63

Query: 70  DAQLDAVIAW-REQPGNQVVTLDDPAYPPALLTMPDPPPLLYIKGRLNLLH-TRAVALVG 127
           +AQ+D   AW  E P   ++TL DP YPP LL M DPP LLY+ G++  LH  R +A+VG
Sbjct: 64  EAQVDRTEAWLAEGPDRHLLTLGDPLYPPDLLQMADPPVLLYVLGQVQALHHPRRLAIVG 123

Query: 128 SRSATPQGVEDAERFARELSVAGVTVVSGLALGIDGAAHRGGLQGIGGTVAVIGTGADLV 187
           SR+ TPQG  +A +FA+ L  A V VVSGLALGIDGAAH G L G   TVAV+GTG D V
Sbjct: 124 SRNPTPQGETNARQFAQALGQAEVCVVSGLALGIDGAAHDGALLGGAPTVAVVGTGLDRV 183

Query: 188 YPAAHHALARQIAVQGAILSEWPLGTPARAAHFPQRNRLIAGLVSGVVIVEAAMRSGSLI 247
           YP  H ALA +IA+QGAI+SE+PLGTP   AHFPQRNR+IAGL  G ++VEAA++SGSLI
Sbjct: 184 YPKRHLALAHRIAMQGAIVSEYPLGTPPLPAHFPQRNRIIAGLSQGTLVVEAAVQSGSLI 243

Query: 248 TARLANEMGRDIFALPGSIHAPLSRGCHRIIKQGAKLVETPDEVLEELGFARQAAPRAAS 307
           TAR+A E GR++FA+PGSIHAP SRGCH +I+QGAKLVE+  ++LE+L F   A+PR   
Sbjct: 244 TARMAVEQGREVFAIPGSIHAPQSRGCHALIRQGAKLVESAQDILEDLHFVPPASPR--- 300

Query: 308 GSAHATFSNRAFSRNTPTGSGAAADRAQLAALQPTEASPAVSAEAPLAAATPCPPANPEA 367
                             G     D A                                 
Sbjct: 301 ----------------DDGEPGTRDSA-------------------------------NE 313

Query: 368 QRLLAALGHSPTTLEILATRTEMEDADLQTALLQLELAGHVTMLPGGRFMRASHG 422
             LL A+GH P +L+ L  RT ++ A LQ  LL+LEL+G V  LPGG   R   G
Sbjct: 314 DSLLKAMGHDPVSLDALQARTGLDTAHLQAHLLELELSGEVARLPGGLLQRQGQG 368