Pairwise Alignments

Query, 422 a.a., DNA-binding protein from Burkholderia phytofirmans PsJN

Subject, 380 a.a., DNA processing chain A from Agrobacterium fabrum C58

 Score =  200 bits (509), Expect = 5e-56
 Identities = 143/404 (35%), Positives = 196/404 (48%), Gaps = 51/404 (12%)

Query: 13  AWLRLALAPGLKPGALRLLLGAFGLPEAIFEQAPEALAEIAGAAAASAALAPTGPDFDAQ 72
           AWLRL  +  + P   R L+  FG  E    +A +AL E++    +S  L    P   ++
Sbjct: 20  AWLRLIRSDNIGPVTFRELINHFGSAE----KALDALPELSKHGGSSRRLRIATP---SE 72

Query: 73  LDAVIAWREQPGNQVVTLDDPAYPPALLTMPDPPPLLYIKGRLNLLHTRAVALVGSRSAT 132
            +  I   E+ G + + + +P YPPAL  M   PPL+ +KG  +      V +VGSR+A+
Sbjct: 73  AEGEIETAEKFGARFIGIGEPDYPPALRQMDGAPPLIAMKGSADAATRACVGIVGSRNAS 132

Query: 133 PQGVEDAERFARELSVAGVTVVSGLALGIDGAAHRGGLQGIGGTVAVIGTGADLVYPAAH 192
             G + A   AR+   AG ++ SGLA GID AAHR  L    GTVA++  G D  YP  +
Sbjct: 133 INGAKFAAMLARDCGRAGYSIASGLARGIDAAAHRASLAT--GTVAMLAGGLDRPYPQEN 190

Query: 193 HALARQIAVQG-AILSEWPLGTPARAAHFPQRNRLIAGLVSGVVIVEAAMRSGSLITARL 251
             L + I  QG A +SE P G   RA  FP+RNRLIAG+  GVVIVEAA RSGSLITARL
Sbjct: 191 FGLLQDIYDQGGATISEMPFGWEPRARDFPRRNRLIAGVSLGVVIVEAAERSGSLITARL 250

Query: 252 ANEMGRDIFALPGSIHAPLSRGCHRIIKQGAKLVETPDEVLEELGFARQAAPRAASGSAH 311
           A E GR +FA+PGS       G +R+IK+GA L     ++LE                  
Sbjct: 251 AGEAGRLVFAVPGSPLDARCEGTNRLIKEGAMLTTGAADILE------------------ 292

Query: 312 ATFSNRAFSRNTPTGSGAAADRAQLAALQPTEASPAVSAEAPLAAATPCPPANPEAQRLL 371
                                   L  L   +       E P +     PP + E   + 
Sbjct: 293 -----------------------ALRPLMEPQLPYDCKIEEPRSDEEMSPPGDDERSVIA 329

Query: 372 AALGHSPTTLEILATRTEMEDADLQTALLQLELAGHVTMLPGGR 415
           +ALG SP  ++ +   T    A +   LL+L++AG +    GGR
Sbjct: 330 SALGPSPVEIDDIIRHTGFSAAAVHLVLLELDIAGRLNRHAGGR 373