Pairwise Alignments

Query, 358 a.a., Inner membrane amino-acid ABC transporter permease protein YhdY from Azospirillum sp. SherDot2

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  136 bits (342), Expect = 2e-36
 Identities = 96/258 (37%), Positives = 145/258 (56%), Gaps = 12/258 (4%)

Query: 102 GAILLALAGLSGMPLFWRRATLWLWLFGLAA---ALLLLTGGPGGPAVPTERW-SGLPVS 157
           GA +LAL GL    LF     L+ + +G+ A     LL+   P G +        GL  S
Sbjct: 338 GAFILALGGL----LFVTARGLYNFNWGVIADNLRTLLIWHFPNGQSDELFMGLGGLAYS 393

Query: 158 LLLAVVGLAGAFPLAVLLALARRSSMGGVRTLAVLFIEVTRGVPLIAVLYVATLLLPLML 217
           LL+AV+ ++ +F + +++ + R S     R   +L+IE+ RG PLI V++     +P++ 
Sbjct: 394 LLMAVIAISVSFFIGLVVGIGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIYFFIPVLF 453

Query: 218 PAGAAIDKLLRAQIAIILFVSAYLAEIVRAGLQSIPAGQYEAAQALGLGYWQSTRLVILP 277
                 +    A IA+ LF  AYLAEIVRAG+Q+IPAGQ EAA + GL + Q+ R +ILP
Sbjct: 454 --NTFFNVFWSATIALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFVQTMRRIILP 511

Query: 278 QALRTVIPSIVTLAIGLFQDTTLIIVIGLFDLLNTARTAAKDPAWLGFYDEAFGFAALIY 337
           QAL+ +IP+IV   I +F+DT+L  V+G+ +L   A+    +   + +  E +G  A +Y
Sbjct: 512 QALKQMIPAIVGQFIAIFKDTSLAFVLGVLELTFVAQ--GINNRLMVYPMEIYGTVAFLY 569

Query: 338 LTVCVIASRYSLWLERRL 355
              C   S Y+  LERRL
Sbjct: 570 FICCWSMSVYAARLERRL 587



 Score = 97.8 bits (242), Expect = 7e-25
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 17/234 (7%)

Query: 124 WLWLFGLAAA----LLLLTGGPGGPAVPTERWSGLPVSLLLAVVGLAGAFPLAVLLALAR 179
           W W+F         +L       G  +  E   GL V++ ++++  A A  L  +L +AR
Sbjct: 27  WGWVFDFGYQFQWDILFTRNTTYGTHLGLEILKGLGVTVRISLISSALALGLGTVLGIAR 86

Query: 180 RSSMGGVRTLAVLFIEVTRGVPLIAVLYVATLLLPLMLPAGAAIDKLLR--------AQI 231
            S    +R  A   +E  R  PL+  L+      P +LP    I +LL         A I
Sbjct: 87  LSLFAPLRLTATAVVEFFRNTPLLVQLFFWYFAFPAILPEN--IRELLFTGNFEFWCATI 144

Query: 232 AIILFVSAYLAEIVRAGLQSIPAGQYEAAQALGLGYWQSTRLVILPQALRTVIPSIVTLA 291
            + ++ SA++AE++RAGLQSIP G  EAA + GL Y Q  R +ILP A R +IP + +  
Sbjct: 145 GLSVYTSAFMAEVIRAGLQSIPKGLLEAAYSSGLNYVQVLRTIILPMAFRAIIPPLGSEF 204

Query: 292 IGLFQDTTLIIVIGLFDLLNTARTAAKDPAWLGFYDEAFGFAALIYLTVCVIAS 345
           +   ++++L +V+G+ +L   ++   +   + GF  EA   A ++YL++ ++ S
Sbjct: 205 LNNMKNSSLAMVVGVAELTWQSQ-QVESLTFKGF--EATSAATVLYLSLSLLIS 255