Pairwise Alignments

Query, 370 a.a., Sensor kinase CckA from Azospirillum sp. SherDot2

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  243 bits (620), Expect = 1e-68
 Identities = 144/320 (45%), Positives = 187/320 (58%), Gaps = 14/320 (4%)

Query: 57  AQLTHSLLAFARRQMLTPKPAHMLPLIAGMRPLLERTLGGLIRFDIDVPPGTAPVMVDPA 116
           A LTH LLAFARRQ L  K   +  LI  M  LL RTLG  I  D  +  G  PV  D  
Sbjct: 533 AALTHRLLAFARRQPLNLKRVELNQLIESMHDLLSRTLGRHIHIDNRLQQGLWPVSSDEN 592

Query: 117 QLESAILNLAINARDAMPQGGVLTLRADNIAIRRQGEPGCPAELAPGDYVAISLTDTGIG 176
           QLESA+LNL INARDAMP GG L L   N+ +  QGE G   +LA G YV + LTD+G G
Sbjct: 593 QLESALLNLVINARDAMPDGGSLLLETRNVELYSQGEVG---DLAAGRYVILRLTDSGCG 649

Query: 177 MEEATLARAFEPFFTTKGVGGGSGPGLSMVYGMVAQSGGGVTIASKVGKGTSVTIFIPRA 236
           M    LA  FEPFFTTK +G G+G GLSMVYG   Q+GG + IAS+ G+GT V++++P  
Sbjct: 650 MSAKVLASVFEPFFTTKPIGQGTGLGLSMVYGFTRQAGGHIQIASEPGEGTQVSLYLPVY 709

Query: 237 SEARALTQEPPSETIPG-----DGAVVLLVDDDLLVRAGAAAVLKMLGYQVIAATSGLEA 291
            E        P++ I G      G  VL+V+DD  VR     VL+MLGYQ + A  G  A
Sbjct: 710 EEEGVAAL--PAKEIEGPLRAKQGETVLVVEDDPAVRLLVIDVLEMLGYQALEAADGNAA 767

Query: 292 LKVLQERMPVDVMITDYAMPGMSGVALIQETRRLAPSLPVLLITGYTDRPEGIE----RC 347
           +++L+    VD+++TD  +PGM+G  L    R+  P LPVL +TGY  +    +      
Sbjct: 768 IRILESSAAVDMLVTDVGLPGMNGRQLADAARQQRPGLPVLFMTGYAKQAASSDFLEPGM 827

Query: 348 AVLHKPFKPQALAEQIATLL 367
            ++ KPF   ALA+++  +L
Sbjct: 828 DMISKPFNLDALAKRVCDML 847