Pairwise Alignments

Query, 526 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 651 a.a., methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009

 Score =  163 bits (412), Expect = 2e-44
 Identities = 114/296 (38%), Positives = 165/296 (55%), Gaps = 24/296 (8%)

Query: 248 RLVETTQRRDAL----------VTDTLTPLGTAIGDQARGLTDQGIADEQQLRADTTSDI 297
           R+   T+RR A+          V   +  +G+A   + RG  D  +   ++      +  
Sbjct: 363 RITHETERRKAMHELAARFETGVGSVVELVGSA-ATELRGTADSMVGTARESERRLVAAT 421

Query: 298 AGYRQAMAGASAAGLILGLAAALLIARSLSRPVVAMTDAMTRLAG------GDRSVTVPG 351
           A  +QA + A A      +AAA+    +    +    D   R+AG      G  +  V  
Sbjct: 422 AASQQATSNAQA------VAAAVEELDASITEIGNRVDQSARVAGEAATQAGRTNEEVRS 475

Query: 352 L-DRRDEIGDVVQLIGSIAAQTNLLALNATIEAARAGEAGRGFAVVANEVKSLAAQTAKA 410
           L +   +IG+VV LI  IA+QTNLLALNATIEAARAG+AGRGFAVVA EVK+LA QT+KA
Sbjct: 476 LAEAAQKIGEVVTLISDIASQTNLLALNATIEAARAGDAGRGFAVVAAEVKALAEQTSKA 535

Query: 411 TEEIEAQIAAVQRVSSEAAGAITEIVKVIGEVNEVSGTIASAIGEQRAATSEISGSIQRA 470
           TEEI  QI ++Q+ +  +  AI  I   + ++NE++  IASA+ EQ AAT EI+ ++  +
Sbjct: 536 TEEITTQINSIQQATQSSVQAIEGITGTVAQINEIATAIASAVREQSAATREIAHNVAES 595

Query: 471 ARGTQDVRDSIAGVTHAFQATSDASRQVRSAADGLSGEADDLRGCVSRFLADMRAA 526
           AR T +V  +I+GV  A + T  A+ QV  +A  LS   + L+  V  FL ++RAA
Sbjct: 596 ARSTTEVSSNISGVNEAARETGVAAGQVVESASELSRSGEALKTQVDTFLREVRAA 651



 Score = 58.2 bits (139), Expect = 9e-13
 Identities = 72/294 (24%), Positives = 118/294 (40%), Gaps = 49/294 (16%)

Query: 243 AAGFDRLVETTQRRDALVTDTLTPLGTAIGDQARGLTDQGIADEQQLRADTTSDIAGYRQ 302
           A G + ++E  +     +  T  PL    G+    L          +  D ++  A  RQ
Sbjct: 226 AFGGELMIEKGEADGKAIATTFGPLKRFSGEPVAVL---------MIARDASAYAALERQ 276

Query: 303 AMAGASAAGLILGLAAALL---IARSLSRPVVAMTDAMTRLAGGDRSVTVPGLDRRDEIG 359
           +M   + A ++  LAAA +   + RS+++P+ A+ +AM  ++ G   V VPG  R DEIG
Sbjct: 277 SMQWLAFAAIVAVLAAAAIAIWLGRSMAKPIQALGNAMRDISSGRHDVEVPGRGRSDEIG 336

Query: 360 DVVQLI----------GSIAAQTNLLAL-------NATIEAARAGEAGRGFAV-----VA 397
            + Q +          G + A  +   +        A  E A   E G G  V      A
Sbjct: 337 LMAQAVEVFKEGLIETGRLRAAQDEQRITHETERRKAMHELAARFETGVGSVVELVGSAA 396

Query: 398 NEVKSLAAQTAKATEEIEAQIAAVQRVSSEA-------AGAITEI---VKVIGEVNEVSG 447
            E++  A        E E ++ A    S +A       A A+ E+   +  IG   + S 
Sbjct: 397 TELRGTADSMVGTARESERRLVAATAASQQATSNAQAVAAAVEELDASITEIGNRVDQSA 456

Query: 448 TIASAIGEQRAATSEISGSIQRAARGTQDVRDSIAGVTH-----AFQATSDASR 496
            +A     Q   T+E   S+  AA+   +V   I+ +       A  AT +A+R
Sbjct: 457 RVAGEAATQAGRTNEEVRSLAEAAQKIGEVVTLISDIASQTNLLALNATIEAAR 510



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 30/194 (15%)

Query: 11  TRIGHRITAGSAGILLFLAAVAGVGINALSETETVVRRNGVLAEQVVDLGRMQTLMLDMR 70
           T IG+R+           A VAG        T   VR    LAE    +G + TL+ D+ 
Sbjct: 446 TEIGNRVDQS--------ARVAGEAATQAGRTNEEVRS---LAEAAQKIGEVVTLISDIA 494

Query: 71  LKTTAFLLNGRDEDA---DAVASLSAEAANLVAAVDRRLSGSGDTA-------------- 113
            +T    LN   E A   DA    +  AA + A  ++    + +                
Sbjct: 495 SQTNLLALNATIEAARAGDAGRGFAVVAAEVKALAEQTSKATEEITTQINSIQQATQSSV 554

Query: 114 -AVQQMTARVAQYRDSFAAVREAHGQRSEAVAEVAKFGSKLQTMLSTILTNAKSGGNVEA 172
            A++ +T  VAQ  +   A+  A  ++S A  E+A   ++     + + +N  SG N  A
Sbjct: 555 QAIEGITGTVAQINEIATAIASAVREQSAATREIAHNVAESARSTTEVSSNI-SGVNEAA 613

Query: 173 LNLAAQAAMHVQAA 186
                 A   V++A
Sbjct: 614 RETGVAAGQVVESA 627